2021-08-06 23:09:00 [time] __start__
2021-08-06 23:09:00 [monitor] cgroup memory limit of 137438953472 bytes detected
2021-08-06 23:09:04 [info] Running crconverter: crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json
2021-08-06 23:09:05 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0      48         0       6 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  116702     412     4         0      40         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:05 [monitor] Stage exceeded its address space quota (using 303.3, allowed 27.103515625G)
2021-08-06 23:09:10 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     100         0       9 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  117900    1515     4         0    1258         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:10 [monitor] Stage exceeded its address space quota (using 304.5, allowed 27.103515625G)
2021-08-06 23:09:15 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     151         0      11 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  118695    2189     4         0    2214         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:15 [monitor] Stage exceeded its address space quota (using 305.3, allowed 27.103515625G)
2021-08-06 23:09:20 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     202         0      13 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  121089    4627     4         0    3996         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:20 [monitor] Stage exceeded its address space quota (using 307.6, allowed 27.103515625G)
2021-08-06 23:09:25 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     253         0      15 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  121355    5086     4         0    3996         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:25 [monitor] Stage exceeded its address space quota (using 307.9, allowed 27.103515625G)
2021-08-06 23:09:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     304         0      17 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  124197    6298     4         0    3996         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:31 [monitor] Stage exceeded its address space quota (using 310.6, allowed 27.103515625G)
2021-08-06 23:09:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      10     6         0     355         0      19 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  127897    9157     4         0    3996         0       2     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:36 [monitor] Stage exceeded its address space quota (using 314.2, allowed 27.103515625G)
2021-08-06 23:09:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     406         0      21 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:41 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:09:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     457         0      23 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:46 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:09:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     508         0      25 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:51 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:09:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     559         0      27 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:09:56 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     610         0      29 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:01 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     661         0      31 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:06 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     712         0      33 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:11 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     763         0      35 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:16 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     814         0      37 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:21 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     865         0      39 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:26 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     916         0      41 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:31 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0     967         0      43 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:36 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0    1018         0      45 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:41 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0    1069         0      47 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:46 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0    1120         0      49 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:51 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:10:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0    1171         0      51 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:10:56 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      12     6         0    1222         0      53 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:01 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1273         0      56 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:06 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1324         0      58 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:11 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1375         0      60 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:16 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      15     6         0    1427         0      63 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:21 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1478         0      65 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:26 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1529         0      67 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:31 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1580         0      69 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:36 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1631         0      71 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:41 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1682         0      73 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:46 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1733         0      75 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:51 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:11:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1784         0      77 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:11:56 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193334      14     6         0    1835         0      79 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13019     4         0    3996         0       3     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:01 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    1886         0      81 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13018     4         0   21566         0       4     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:06 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    1937         0      83 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13016     4         0   42708         0       4     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:11 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    1988         0      85 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13016     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:16 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2039         0      87 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13009     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:21 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2090         0      89 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   13002     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:26 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2141         0      91 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12995     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:31 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2192         0      93 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12988     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:36 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2243         0      95 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12981     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:41 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2294         0      97 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12974     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:46 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2345         0      99 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12967     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:51 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:12:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2396         0     101 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12960     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:12:56 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2447         0     103 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12953     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:01 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2498         0     106 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12946     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:06 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2549         0     108 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12939     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:11 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      14     6         0    2600         0     110 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12932     4         0   50826         0       5     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:16 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2651         0     112 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12926     4         0   54929         0       6     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:21 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2702         0     114 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  130936   12924     4         0   75955         0       7     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:26 [monitor] Stage exceeded its address space quota (using 317.2, allowed 27.103515625G)
2021-08-06 23:13:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2753         0     116 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12930     4         0   75955         0       8     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:31 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:13:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2804         0     118 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12928     4         0   75955         0       8     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:36 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:13:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2855         0     120 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:41 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:13:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2906         0     122 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:46 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:13:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    2957         0     124 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:51 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:13:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3008         0     126 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:13:56 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3059         0     128 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:01 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3110         0     130 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:06 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3161         0     132 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:11 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3212         0     134 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:16 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3263         0     136 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:21 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3314         0     138 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:26 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3365         0     140 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:31 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3416         0     142 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:36 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3467         0     144 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:41 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3518         0     146 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:46 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3569         0     148 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:51 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:14:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3620         0     150 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:14:56 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3671         0     152 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:01 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3722         0     155 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:06 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193335      15     6         0    3773         0     157 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:11 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    3824         0     159 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:16 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    3875         0     161 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:21 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    3926         0     163 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:26 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    3977         0     165 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:31 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4028         0     167 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:36 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4079         0     169 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12966     4         0   75955         0       9     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:41 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4130         0     171 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12964     4         0   94429         0      10     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:46 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4181         0     173 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12963     4         0  116843         0      10     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:51 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:15:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4232         0     175 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12958     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:15:56 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4283         0     177 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12950     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:01 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4334         0     179 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12943     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:06 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4385         0     181 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12935     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:11 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4436         0     183 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12927     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:16 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4487         0     185 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12920     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:21 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4538         0     187 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12914     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:26 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4589         0     189 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12907     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:31 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4640         0     191 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12901     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:36 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4691         0     193 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12894     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:41 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4742         0     195 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12888     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:46 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4793         0     197 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12881     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:51 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:16:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4844         0     199 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  132456   12873     4         0  122697         0      11     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:16:56 [monitor] Stage exceeded its address space quota (using 318.7, allowed 27.103515625G)
2021-08-06 23:17:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4896         0     201 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5086         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171022   12871     5         0  139900         0      12     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:01 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    4949         0     204 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171087   12883     5         0  149697         0      86     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:06 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5002         0     206 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   12881     5         0  151216         0     178     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:11 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5055         0     208 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   12880     5         0  151216         0     178     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:16 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5108         0     210 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   12878     5         0  151216         0     178     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:21 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5161         0     212 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   12877     5         0  151216         0     178     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:26 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5214         0     214 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   12875     5         0  151216         0     178     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:31 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5267         0     216 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171091   13075     5         0  153223         0     198     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:36 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5320         0     218 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171093   13080     5         0  155678         0     263     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:41 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5373         0     220 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5087         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171093   13073     5         0  158390         0     295     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:46 [monitor] Stage exceeded its address space quota (using 356.4, allowed 27.103515625G)
2021-08-06 23:17:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5426         0     222 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5090         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171128   13096     5         0  161953         0     314     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:51 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:17:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5479         0     224 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5090         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171148   13119     5         0  165746         0     314     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:17:56 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5532         0     226 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5090         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171162   13133     5         0  169536         0     314     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:01 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5585         0     228 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171162   13131     5         0  173226         0     321     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:06 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5638         0     230 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171164   13132     5         0  177086         0     321     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:11 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5691         0     232 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171164   13131     5         0  180935         0     321     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:16 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5744         0     234 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171164   13129     5         0  184832         0     321     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:21 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5797         0     236 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171164   13128     5         0  188566         0     326     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:26 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5850         0     238 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171165   13126     5         0  192258         0     326     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:31 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5903         0     240 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171165   13124     5         0  196137         0     326     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:36 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    5956         0     242 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171168   13126     5         0  199027         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:41 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:46 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    6009         0     244 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171168   13124     5         0  202744         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:46 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:51 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    6062         0     246 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171173   13127     5         0  205396         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:51 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:18:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    6115         0     248 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171176   13128     5         0  209004         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:18:56 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:19:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    6168         0     250 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171202   13153     5         0  211160         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:19:01 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:19:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              276884  193336      15     6         0    6221         0     253 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276890     554     108     1         0    5091         0    4126   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac/stages/cloupe/atac_cloupe_preprocess join /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER.ATAC_GEX_CLOUPE_PREPROCESS.fork0.u45960df949 
                              276962  171204   13153     5         0  212154         0     331     crconverter count-NYU070 SC_ATAC_GEX_COUNTER --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe --description "count-NYU070" --peaks /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed --fragmentsindex /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi --geneannotations /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz --contiginfo /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json 
2021-08-06 23:19:06 [monitor] Stage exceeded its address space quota (using 356.5, allowed 27.103515625G)
2021-08-06 23:19:07 [info] crconverter output: b'inputs: {name:count-NYU070 description:"count-NYU070" pipestanceType:13 outputPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe matrixPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5 analysisPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5 metricsPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/MERGE_RNA_ATAC_DATA/fork0/join-u45960df83d/files/summary.json aggregationPath: gemGroupsPath: contigInfoPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/contig_info.json peakLocationsPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed fragmentsIndexPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi geneAnnotationsPath:/gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz geneAnnotationTypes:[] spatialImagePath: spatialFiducialsPath: spatialTissuePath: spatialDziPath: spatialTilesPaths:[] spatialScaleFactorsPath: spatialAggregationPath: spatialImageType: analysisTitle:Default Pipeline Analysis cellsPerTag: cellsPerProtospacer:}\nConverting matrix:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/loupe_matrix_h5.h5\nConverting analysis.h5:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/ATAC_GEX_SUMMARIZE_ANALYSIS/fork0/join-u45960df909/files/analysis_h5.h5\nConverting RunInfo\nConverting peak info:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/headerless_peaks.bed\nConverting gene annotations:  /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz\nConverting transcript annotations:  /gpfs/data/sequence/cellranger-refdata/refdata-cellranger-arc-GRCh38-2020-A/genes/genes.gtf.gz\nConverting fragments index:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MARK_ATAC_DUPLICATES/fork0/join-u45960dc732/files/fragments.tsv.gz.tbi\nWrote .cloupe file to /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/ATAC_GEX_CLOUPE_PREPROCESS/fork0/join-u45960df949/files/output_for_cloupe.cloupe\n'
2021-08-06 23:19:07 [time] __end__
