@include "atac_rna/sc_atac_gex_counter_stages.mro"

call CHECK_JOINT_BARCODES_COMPATIBILITY(
    gex_counts        = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_GEX_MATRIX_COMPUTER/MAKE_SHARD/fork0/join-u45960d708c/files/bc_counts_json.json",
    atac_counts       = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_ATAC_MATRIX_COMPUTER/MAKE_ATAC_SHARDS/fork0/join-u45960d708f/files/barcode_counts.json",
    barcode_whitelist = "737K-arc-v1",
)
