[stdout]
num_feature_linkages False None
num_genes_with_linkage False None
num_peaks_with_linkage False None
total_read_pairs False rna
good_bc_frac False rna
good_umi_frac False rna
bc_bases_with_q30_frac False rna
umi_bases_with_q30_frac False rna
read_bases_with_q30_frac False rna
i1_bases_with_q30_frac False rna
i2_bases_with_q30_frac False rna
tso_frac False rna
multi_cdna_pcr_dupe_reads_frac False rna
num_fragments False atac
frac_valid_barcode False atac
bc_q30_bases_frac False atac
r1_q30_bases_frac False atac
r2_q30_bases_frac False atac
si_q30_bases_frac False atac
frac_pcr_dup_passed_filters False atac
annotated_cells False None
cells_detected False None
rna_force_cells_min_count False None
atac_force_cells_min_count False None
multi_transcriptome_total_raw_reads_per_filtered_bc False rna
filtered_bcs_conf_mapped_barcoded_reads_cum_frac GRCh38 rna
filtered_bcs_median_counts GRCh38 rna
filtered_bcs_median_unique_genes_detected GRCh38 rna
filtered_bcs_total_unique_genes_detected GRCh38 rna
mean_sequenced_fragments_per_cell False atac
frac_passed_filter_fragments_in_cells False atac
frac_cut_fragments_in_peaks False atac
median_fragments_per_cell False atac
genome_mapped_reads_frac GRCh38 rna
genome_conf_mapped_reads_frac GRCh38 rna
intergenic_conf_mapped_reads_frac GRCh38 rna
intronic_conf_mapped_reads_frac GRCh38 rna
exonic_conf_mapped_reads_frac GRCh38 rna
transcriptome_conf_mapped_reads_frac GRCh38 rna
multi_antisense_reads_frac False rna
frac_reads_mapq_gt_30 False atac
frac_reads_unmapped False atac
frac_reads_mapq_gt_30_mito False atac
frac_mapped_confidently False atac
total_peaks_detected False atac
frac_primary_genome_in_peaks False atac
tss_enrichment_score False atac
frac_fragments_overlapping_tss False atac
frac_fragments_overlapping_peaks False atac
frac_fragments_overlapping_targets False atac
frac_fragments_overlapping_dnase False atac
frac_fragments_overlapping_enhancer False atac
frac_fragments_overlapping_promoter False atac
frac_fragments_overlapping_blacklist False atac
ctcf_enrichment_score False atac
median_fragments_per_noncell False atac
observed_doublets False atac
observed_doublet_rate False atac
inferred_doublet_rate False atac
median_purity False atac
filtered_bcs_mean_count_purity GRCh38 rna
{'Feature linkages detected': 40507, 'Linked genes': 4864, 'Linked peaks': 14852, 'GEX Sequenced read pairs': 401123565, 'GEX Valid barcodes': 0.9468826320388332, 'GEX Valid UMIs': 0.9995212298235332, 'GEX Q30 bases in barcode': 0.9218396618370888, 'GEX Q30 bases in UMI': 0.919353162387888, 'GEX Q30 bases in read 2': 0.9007345997786728, 'GEX Q30 bases in sample index i1': 0.9752183642253488, 'GEX Q30 bases in sample index i2': 0.9875251363574892, 'GEX Reads with TSO': 0.20661730257607777, 'GEX Percent duplicates': 0.7988586929474627, 'ATAC Sequenced read pairs': 461993231, 'ATAC Valid barcodes': 0.9829042668376239, 'ATAC Q30 bases in barcode': 0.9005315665815459, 'ATAC Q30 bases in read 1': 0.9369546962041961, 'ATAC Q30 bases in read 2': 0.924791034827954, 'ATAC Q30 bases in sample index i1': 0.9296855279574432, 'ATAC Percent duplicates': 0.24333927671418187, 'Estimated number of cells': 8381, 'GEX Mean raw reads per cell': 47861.062522372034, 'GEX Fraction of transcriptomic reads in cells': 0.8327792482616585, 'GEX Median UMI counts per cell': 3228.0, 'GEX Median genes per cell': 1649.0, 'GEX Total genes detected': 28837, 'ATAC Mean raw read pairs per cell': 55123.87913136857, 'ATAC Fraction of high-quality fragments in cells': 0.5653998071076579, 'ATAC Fraction of transposition events in peaks in cells': 0.5396934611411608, 'ATAC Median high-quality fragments per cell': 12276.0, 'GEX Reads mapped to genome': 0.9512753283392862, 'GEX Reads mapped confidently to genome': 0.8621061442750191, 'GEX Reads mapped confidently to intergenic regions': 0.13848480330493673, 'GEX Reads mapped confidently to intronic regions': 0.28489530152635134, 'GEX Reads mapped confidently to exonic regions': 0.438726039443731, 'GEX Reads mapped confidently to transcriptome': 0.6709439197370516, 'GEX Reads mapped antisense to gene': 0.047267158188524776, 'ATAC Confidently mapped read pairs': 0.9048899766239216, 'ATAC Unmapped read pairs': 0.007837355088867091, 'ATAC Non-nuclear read pairs': 0.0024612438531593983, 'ATAC Number of peaks': 120519, 'ATAC Fraction of genome in peaks': 0.032852920456469474, 'ATAC TSS enrichment score': 6.628, 'ATAC Fraction of high-quality fragments overlapping TSS': 0.3693087670255058, 'ATAC Fraction of high-quality fragments overlapping peaks': 0.5869198605944717}
