@include "atac_rna/sc_atac_gex_counter_stages.mro"

call SPLIT_SAMPLE_DEF(
    sample_def = [
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Gene Expression",
            "read_path": "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/fastq/",
            "sample_indices": ["any"],
            "sample_names": ["NYU070"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
        {
            "fastq_id": null,
            "fastq_mode": "ILMN_BCL2FASTQ",
            "gem_group": null,
            "lanes": null,
            "library_type": "Chromatin Accessibility",
            "read_path": "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/fastq/",
            "sample_indices": ["any"],
            "sample_names": ["NYU070_ATAC"],
            "subsample_rate": null,
            "target_set": null,
            "target_set_name": null,
        },
    ],
)
