@include "atac_rna/_joint_cell_detector_stages.mro"

call FILTER_UMI_MATRIX(
    sample_id      = "count-NYU070",
    rna_raw_matrix = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_GEX_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-u45960dd236/files/raw_feature_bc_matrix.h5",
    cell_barcodes  = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/DETECT_JOINT_CELL_BARCODES/fork0/join-u45960dea76/files/cell_barcodes.csv",
    gem_groups     = [1],
)
