2021-08-06 22:06:51 [time] __start__
2021-08-06 22:06:51 [monitor] cgroup memory limit of 137438953472 bytes detected
2021-08-06 22:06:56 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0      39         0       6 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     454      97     1         0    3638         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:06:56 [monitor] Stage exceeded its address space quota (using 189.2, allowed 9G)
2021-08-06 22:07:01 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0      68         0       8 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     457     102     1         0    4220         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:01 [monitor] Stage exceeded its address space quota (using 189.2, allowed 9G)
2021-08-06 22:07:06 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0      98         0      11 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     463     108     1         0    4805         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:06 [monitor] Stage exceeded its address space quota (using 189.3, allowed 9G)
2021-08-06 22:07:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0     127         0      13 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     465     110     1         0    5390         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:11 [monitor] Stage exceeded its address space quota (using 189.3, allowed 9G)
2021-08-06 22:07:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0     156         0      15 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     465     110     1         0    5972         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:16 [monitor] Stage exceeded its address space quota (using 189.3, allowed 9G)
2021-08-06 22:07:21 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0     185         0      17 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     466     111     1         0    6560         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:21 [monitor] Stage exceeded its address space quota (using 189.3, allowed 9G)
2021-08-06 22:07:26 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              253183  193334      10     6         0     214         0      19 /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/bin/mrjob /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
                              253189     467     112     1         0    7147         0    4121   python /gpfs/share/apps/cellranger/arc-2.0.0/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/arc-2.0.0/mro/atac_rna/stages/processing/generate_sc_atac_counts main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/GENERATE_SC_ATAC_COUNTS/fork0/chnk17-u45960dea95/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/journal/SC_ATAC_GEX_COUNTER_CS.SC_ATAC_GEX_COUNTER._JOINT_CELL_DETECTOR.GENERATE_SC_ATAC_COUNTS.fork0.chnk17.u45960dea95 
2021-08-06 22:07:26 [monitor] Stage exceeded its address space quota (using 189.3, allowed 9G)
2021-08-06 22:07:28 [time] __end__
