@include "atac/_sc_atac_analyzer_stages.mro"

call ATAC_RUN_GRAPH_CLUSTERING(
    matrix_h5          = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/MERGE_ATAC_RNA_MATRICES/fork0/join-u45960deb66/files/atac.h5",
    factorization      = ["lsa"],
    reduced_data       = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/_DIMENSION_REDUCER/_ATAC_DIMENSION_REDUCER/REDUCE_DIMENSIONS/fork0/join-u45960deff0/files/reduced_data",
    num_neighbors      = null,
    neighbor_a         = null,
    neighbor_b         = null,
    balltree_leaf_size = null,
    similarity_type    = "nn",
)
