@include "atac/_sc_atac_analyzer_stages.mro"

call CLUSTER_CELLS(
    filtered_matrix = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/MERGE_ATAC_RNA_MATRICES/fork0/join-u45960deb66/files/atac.h5",
    reduced_data    = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/_DIMENSION_REDUCER/_ATAC_DIMENSION_REDUCER/REDUCE_DIMENSIONS/fork0/join-u45960deff0/files/reduced_data",
    factorization   = ["lsa"],
    minclusters     = 2,
    maxclusters     = null,
    num_dims        = null,
    random_seed     = null,
)
