@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_DIFFERENTIAL_EXPRESSION as COMPUTE_DIFFERENTIAL_GEX(
    matrix_h5        = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_JOINT_CELL_DETECTOR/MERGE_ATAC_RNA_MATRICES/fork0/join-u45960deb66/files/gex.h5",
    clustering_h5    = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-07-27/cellranger/count-NYU070/SC_ATAC_GEX_COUNTER_CS/SC_ATAC_GEX_COUNTER/_SC_ATAC_GEX_ANALYZER/_GEX_CLUSTERING_COMPUTER/COMBINE_CLUSTERING/fork0/chnk0-u45960df03d/files/clustering/pca/pca_clustering.h5",
    skip             = false,
    random_seed      = null,
    max_clusters     = null,
    is_antibody_only = false,
)
