@include "rna/_sc_rna_analyzer_stages.mro"

call COMBINE_CLUSTERING(
    skip           = false,
    kmeans_h5      = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-uac0168abc4/files/kmeans_h5.h5",
    kmeans_csv     = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_KMEANS/fork0/join-uac0168abc4/files/kmeans_csv",
    graphclust_h5  = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-uac0168abe0/files/clusters_h5.h5",
    graphclust_csv = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/MERGE_CLUSTERS/fork0/join-uac0168abe0/files/clusters_csv",
)
