@include "rna/_sc_rna_analyzer_stages.mro"

call MERGE_CLUSTERS(
    matrix_h5   = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-uac0168ab19/files/preprocessed_matrix_h5.h5",
    pca_h5      = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-uac0168abc3/files/pca_h5.h5",
    clusters_h5 = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-uac0168abc4/files/clusters_h5.h5",
    skip        = false,
)
