@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_DIFFERENTIAL_EXPRESSION(
    matrix_h5        = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-uac0168ab19/files/preprocessed_matrix_h5.h5",
    clustering_h5    = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/COMBINE_CLUSTERING/fork0/chnk0-uac0168abfc/files/clustering_h5.h5",
    skip             = false,
    random_seed      = null,
    max_clusters     = null,
    is_antibody_only = false,
)
