@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_GRAPH_CLUSTERING(
    matrix_h5          = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-uac0168ab19/files/preprocessed_matrix_h5.h5",
    pca_h5             = "/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-uac0168abc3/files/pca_h5.h5",
    num_neighbors      = null,
    neighbor_a         = null,
    neighbor_b         = null,
    num_bcs            = null,
    input_pcs          = null,
    balltree_leaf_size = null,
    similarity_type    = "nn",
    skip               = false,
)
