2021-10-14 18:21:42 [time] __start__
2021-10-14 18:21:42 [monitor] cgroup memory limit of 103079215104 bytes detected
2021-10-14 18:21:43 [info] Running crconverter: crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json
2021-10-14 18:21:47 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0      48         0       6 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  117302     887     4         0     591         0       2     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:21:47 [monitor] Stage exceeded its address space quota (using 341.5, allowed 11G)
2021-10-14 18:21:52 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0      99         0       8 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  119750    3351     4         0    1255         0       2     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:21:52 [monitor] Stage exceeded its address space quota (using 343.9, allowed 11G)
2021-10-14 18:21:57 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0     152         0      11 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120080    3685     4         0    1255         0       3     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:21:57 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:02 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0     203         0      13 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120080    3685     4         0    1255         0       3     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:02 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:07 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0     254         0      15 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120080    3685     4         0    1255         0       3     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:07 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:12 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      10     7         0     305         0      17 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120080    3685     4         0    1255         0       3     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:12 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:17 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     356         0      19 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120080    3685     4         0    1255         0       3     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:17 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:22 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     407         0      21 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3686     4         0   11521         0       5     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:22 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:27 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     458         0      23 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3686     4         0   11521         0       5     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:27 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:32 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     509         0      25 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3686     4         0   11521         0       5     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:32 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:37 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     560         0      27 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3686     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:37 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:42 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     611         0      29 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3682     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:42 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:47 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     662         0      31 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3678     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:47 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:52 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     713         0      33 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3675     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:52 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:22:57 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     764         0      35 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3671     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:22:57 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:23:02 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     815         0      37 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3668     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:02 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:23:07 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     866         0      39 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  120081    3664     4         0   17788         0       9     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:07 [monitor] Stage exceeded its address space quota (using 344.2, allowed 11G)
2021-10-14 18:23:12 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     918         0      41 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  158648    3663     5         0   28054         0      11     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:12 [monitor] Stage exceeded its address space quota (using 381.8, allowed 11G)
2021-10-14 18:23:17 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0     971         0      43 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  158648    3656     5         0   28054         0      11     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:17 [monitor] Stage exceeded its address space quota (using 381.8, allowed 11G)
2021-10-14 18:23:22 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0    1024         0      45 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1602         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  158648    3648     5         0   28054         0      11     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:22 [monitor] Stage exceeded its address space quota (using 381.8, allowed 11G)
2021-10-14 18:23:27 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      12     7         0    1077         0      47 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1603         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  158723    3652     5         0   33820         0      23     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:27 [monitor] Stage exceeded its address space quota (using 381.9, allowed 11G)
2021-10-14 18:23:32 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               57001  231836      14     7         0    1130         0      49 /gpfs/share/apps/cellranger/6.0.1/external/martian/bin/mrjob /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57007     522      83     1         0    1603         0      41   python /gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/cellranger/6.0.1/mro/rna/stages/cloupe/cloupe_preprocess main /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76 /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/journal/SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.uac0168ad76 
                               57012  158724    3650     5         0   34805         0      97     crconverter count-PAXUGA_Relapse SC_RNA_COUNTER_CS --matrix /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 --analysis /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 --output /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe --description  --metrics /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json --gemgroups /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json 
2021-10-14 18:23:32 [monitor] Stage exceeded its address space quota (using 381.9, allowed 11G)
2021-10-14 18:23:34 [info] crconverter output: b'inputs: {name:count-PAXUGA_Relapse description: pipestanceType:1 outputPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe matrixPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5 analysisPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5 metricsPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/SUMMARIZE_REPORTS/fork0/chnk0-uac0168ad59/files/metrics_summary_json.json aggregationPath: gemGroupsPath:/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/gem_group_index_json.json contigInfoPath: peakLocationsPath: fragmentsIndexPath: geneAnnotationsPath: geneAnnotationTypes:[] spatialImagePath: spatialFiducialsPath: spatialTissuePath: spatialDziPath: spatialTilesPaths:[] spatialScaleFactorsPath: spatialAggregationPath: spatialImageType: analysisTitle:Default Pipeline Analysis cellsPerTag: cellsPerProtospacer:}\nConverting matrix:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_GEM_WELL_PROCESSOR/COUNT_GEM_WELL_PROCESSOR/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-uac0168a0cc/files/filtered_matrices_h5.h5\nConverting analysis.h5:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/COUNT_ANALYZER/SC_RNA_ANALYZER/SUMMARIZE_ANALYSIS/fork0/join-uac0168ad54/files/analysis/analysis.h5\nConverting RunInfo\nWrote .cloupe file to /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/SC_RNA_COUNTER_CS/SC_MULTI_CORE/MULTI_REPORTER/CLOUPE_PREPROCESS/fork0/chnk0-uac0168ad76/files/output_for_cloupe.cloupe\n'
2021-10-14 18:23:35 [time] __end__
