Martian Runtime - v4.0.4
2021-10-14 15:40:01 [build  ] Built with Go version go1.15.6
2021-10-14 15:40:01 [cmdline] mrp __count-PAXUGA_Relapse.mro count-PAXUGA_Relapse --jobmode local --localcores 16 --localmem 128
2021-10-14 15:40:01 [pid    ] 44033
2021-10-14 15:40:01 [environ] SLURM_NODELIST=cn-0037
2021-10-14 15:40:01 [environ] SLURM_JOB_NAME=10x-cellranger-count.sh
2021-10-14 15:40:01 [environ] XDG_SESSION_ID=34093
2021-10-14 15:40:01 [environ] SLURM_TOPOLOGY_ADDR=cn-0037
2021-10-14 15:40:01 [environ] HOSTNAME=cn-0037
2021-10-14 15:40:01 [environ] SLURM_PRIO_PROCESS=0
2021-10-14 15:40:01 [environ] SLURM_NODE_ALIASES=(null)
2021-10-14 15:40:01 [environ] SHELL=/bin/bash
2021-10-14 15:40:01 [environ] TERM=xterm-256color
2021-10-14 15:40:01 [environ] SLURM_JOB_QOS=normal
2021-10-14 15:40:01 [environ] TMPDIR=/tmp
2021-10-14 15:40:01 [environ] SLURM_TOPOLOGY_ADDR_PATTERN=node
2021-10-14 15:40:01 [environ] SSH_CLIENT=10.161.16.143 57785 22
2021-10-14 15:40:01 [environ] SSH_TTY=/dev/pts/125
2021-10-14 15:40:01 [environ] SLURM_MEM_PER_CPU=4096
2021-10-14 15:40:01 [environ] SLURM_NNODES=1
2021-10-14 15:40:01 [environ] USER=guzmae06
2021-10-14 15:40:01 [environ] LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
2021-10-14 15:40:01 [environ] SLURM_JOBID=14937309
2021-10-14 15:40:01 [environ] SLURM_NTASKS=24
2021-10-14 15:40:01 [environ] SLURM_TASKS_PER_NODE=24
2021-10-14 15:40:01 [environ] PATH=/gpfs/share/apps/cellranger/6.0.1/lib/bin:/gpfs/share/apps/cellranger/6.0.1/external/martian/bin:/gpfs/share/apps/cellranger/6.0.1/external/anaconda/bin:/gpfs/share/apps/cellranger/6.0.1/bin/tenkit:/gpfs/share/apps/cellranger/6.0.1/bin:/gpfs/share/apps/cellranger/6.0.1/bin:/gpfs/share/apps/python/cpu/2.7.15-ES/bin:/gpfs/share/apps/jre/7u80/bin:/cm/local/apps/environment-modules/4.4.1/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/sbin:/cm/local/apps/environment-modules/current/bin:/opt/ibutils/bin:/usr/lpp/mmfs/bin:/gpfs/home/guzmae06/.local/bin:/gpfs/home/guzmae06/bin
2021-10-14 15:40:01 [environ] SLURM_WORKING_CLUSTER=slurm_cluster:bigpurple-hn1.ib.cluster:6817:9216:101
2021-10-14 15:40:01 [environ] SLURM_CONF=/etc/slurm/slurm.conf
2021-10-14 15:40:01 [environ] SLURM_JOB_ID=14937309
2021-10-14 15:40:01 [environ] SLURM_CPUS_PER_TASK=1
2021-10-14 15:40:01 [environ] SLURM_JOB_USER=guzmae06
2021-10-14 15:40:01 [environ] PWD=/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger
2021-10-14 15:40:01 [environ] LANG=C
2021-10-14 15:40:01 [environ] SLURM_JOB_UID=1023868538
2021-10-14 15:40:01 [environ] SLURM_NODEID=0
2021-10-14 15:40:01 [environ] SLURM_SUBMIT_DIR=/gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger
2021-10-14 15:40:01 [environ] SLURM_TASK_PID=43980
2021-10-14 15:40:01 [environ] SLURM_NPROCS=24
2021-10-14 15:40:01 [environ] SLURM_CPUS_ON_NODE=24
2021-10-14 15:40:01 [environ] SLURM_PROCID=0
2021-10-14 15:40:01 [environ] ENVIRONMENT=BATCH
2021-10-14 15:40:01 [environ] SLURM_JOB_NODELIST=cn-0037
2021-10-14 15:40:01 [environ] HOME=/gpfs/home/guzmae06
2021-10-14 15:40:01 [environ] SHLVL=2
2021-10-14 15:40:01 [environ] SLURM_LOCALID=0
2021-10-14 15:40:01 [environ] PYTHONPATH_modshare=/gpfs/share/apps/python/cpu/2.7.15-ES/lib/python2.7/site-packages:1
2021-10-14 15:40:01 [environ] SLURM_JOB_GID=1023888257
2021-10-14 15:40:01 [environ] SLURM_JOB_CPUS_PER_NODE=24
2021-10-14 15:40:01 [environ] SLURM_CLUSTER_NAME=slurm_cluster
2021-10-14 15:40:01 [environ] PYTHON_ROOT=/gpfs/share/apps/python/cpu/2.7.15-ES
2021-10-14 15:40:01 [environ] SLURM_GTIDS=0
2021-10-14 15:40:01 [environ] SLURM_SUBMIT_HOST=bigpurple-ln3
2021-10-14 15:40:01 [environ] SLURM_JOB_PARTITION=cpu_medium
2021-10-14 15:40:01 [environ] BASH_ENV=/cm/local/apps/environment-modules/4.4.1/init/bash
2021-10-14 15:40:01 [environ] LOGNAME=guzmae06
2021-10-14 15:40:01 [environ] LD_LIBRARY_PATH_modshare=/gpfs/share/apps/jre/7u80/lib/amd64:1:/gpfs/share/apps/python/cpu/2.7.15-ES/lib:1:/gpfs/share/apps/jre/7u80/lib/amd64/jli:1:/gpfs/share/apps/jre/7u80/lib/amd64/server:1
2021-10-14 15:40:01 [environ] SLURM_JOB_ACCOUNT=system
2021-10-14 15:40:01 [environ] SSH_CONNECTION=10.161.16.143 57785 10.189.18.111 22
2021-10-14 15:40:01 [environ] SLURM_JOB_NUM_NODES=1
2021-10-14 15:40:01 [environ] XDG_RUNTIME_DIR=/run/user/1023868538
2021-10-14 15:40:01 [environ] BASH_FUNC_module()=() {  unset _mlshdbg;
 if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then
 case "$-" in 
 *v*x*)
 set +vx;
 _mlshdbg='vx'
 ;;
 *v*)
 set +v;
 _mlshdbg='v'
 ;;
 *x*)
 set +x;
 _mlshdbg='x'
 ;;
 *)
 _mlshdbg=''
 ;;
 esac;
 fi;
 unset _mlre _mlIFS;
 if [ -n "${IFS+x}" ]; then
 _mlIFS=$IFS;
 fi;
 IFS=' ';
 for _mlv in ${MODULES_RUN_QUARANTINE:-};
 do
 if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then
 if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then
 _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' ";
 fi;
 _mlrv="MODULES_RUNENV_${_mlv}";
 _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' ";
 fi;
 done;
 if [ -n "${_mlre:-}" ]; then
 eval `eval ${_mlre}/usr/bin/tclsh /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd.tcl bash '"$@"'`;
 else
 eval `/usr/bin/tclsh /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd.tcl bash "$@"`;
 fi;
 _mlstatus=$?;
 if [ -n "${_mlIFS+x}" ]; then
 IFS=$_mlIFS;
 else
 unset IFS;
 fi;
 unset _mlre _mlv _mlrv _mlIFS;
 if [ -n "${_mlshdbg:-}" ]; then
 set -$_mlshdbg;
 fi;
 unset _mlshdbg;
 return $_mlstatus
}
2021-10-14 15:40:01 [environ] BASH_FUNC_switchml()=() {  typeset swfound=1;
 if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then
 typeset swname='main';
 if [ -e /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd.tcl ]; then
 typeset swfound=0;
 unset MODULES_USE_COMPAT_VERSION;
 fi;
 else
 typeset swname='compatibility';
 if [ -e /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd-compat ]; then
 typeset swfound=0;
 MODULES_USE_COMPAT_VERSION=1;
 export MODULES_USE_COMPAT_VERSION;
 fi;
 fi;
 if [ $swfound -eq 0 ]; then
 echo "Switching to Modules $swname version";
 source /cm/local/apps/environment-modules/4.4.1/init/bash;
 else
 echo "Cannot switch to Modules $swname version, command not found";
 return 1;
 fi
}
2021-10-14 15:40:01 [environ] BASH_FUNC__module_raw()=() {  unset _mlshdbg;
 if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then
 case "$-" in 
 *v*x*)
 set +vx;
 _mlshdbg='vx'
 ;;
 *v*)
 set +v;
 _mlshdbg='v'
 ;;
 *x*)
 set +x;
 _mlshdbg='x'
 ;;
 *)
 _mlshdbg=''
 ;;
 esac;
 fi;
 unset _mlre _mlIFS;
 if [ -n "${IFS+x}" ]; then
 _mlIFS=$IFS;
 fi;
 IFS=' ';
 for _mlv in ${MODULES_RUN_QUARANTINE:-};
 do
 if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then
 if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then
 _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' ";
 fi;
 _mlrv="MODULES_RUNENV_${_mlv}";
 _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' ";
 fi;
 done;
 if [ -n "${_mlre:-}" ]; then
 eval `eval ${_mlre}/usr/bin/tclsh /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd.tcl bash '"$@"'`;
 else
 eval `/usr/bin/tclsh /cm/local/apps/environment-modules/4.4.1/libexec/modulecmd.tcl bash "$@"`;
 fi;
 _mlstatus=$?;
 if [ -n "${_mlIFS+x}" ]; then
 IFS=$_mlIFS;
 else
 unset IFS;
 fi;
 unset _mlre _mlv _mlrv _mlIFS;
 if [ -n "${_mlshdbg:-}" ]; then
 set -$_mlshdbg;
 fi;
 unset _mlshdbg;
 return $_mlstatus
}
2021-10-14 15:40:01 [environ] _=/gpfs/share/apps/cellranger/6.0.1/bin/cellranger
2021-10-14 15:40:01 [environ] LC_CTYPE=en_US.UTF-8
2021-10-14 15:40:01 [environ] PYTHONNOUSERSITE=1
2021-10-14 15:40:01 [environ] PYTHONPATH=/gpfs/share/apps/cellranger/6.0.1/external/martian/adapters/python:/gpfs/share/apps/cellranger/6.0.1/lib/python
2021-10-14 15:40:01 [environ] TENX_PRODUCT=cellranger
2021-10-14 15:40:01 [environ] TENX_VERSION=cellranger-6.0.1
2021-10-14 15:40:01 [environ] TENX_COPYRIGHT=Copyright (c) 2021 10x Genomics, Inc.  All rights reserved.
2021-10-14 15:40:01 [options] --localcores=16
2021-10-14 15:40:01 [options] --localmem=128
2021-10-14 15:40:01 [environ] MROPATH=/gpfs/share/apps/cellranger/6.0.1/mro
2021-10-14 15:40:01 [version] MRO Version=cellranger-6.0.1
2021-10-14 15:40:01 [options] --jobmode=local
2021-10-14 15:40:01 [options] --vdrmode=rolling
2021-10-14 15:40:01 [options] --profile=disable
2021-10-14 15:40:01 [options] --stackvars=false
2021-10-14 15:40:01 [options] --zip=false
2021-10-14 15:40:01 [options] --limit-loadavg=false
2021-10-14 15:40:01 [options] --noexit=false
2021-10-14 15:40:01 [options] --nopreflight=false
2021-10-14 15:40:01 [jobmngr] Job config = /gpfs/share/apps/cellranger/6.0.1/external/martian/jobmanagers/config.json
2021-10-14 15:40:01 [jobmngr] Using 16 cores, per --localcores option.
2021-10-14 15:40:01 [jobmngr] Using 128 GB, per --localmem option.
2021-10-14 15:40:01 [jobmngr] WARNING: User-supplied amount 128 GB is higher than the detected cgroup memory limit of 96.0 GB
2021-10-14 15:40:01 [jobmngr] WARNING: detected a cgroup soft memory limit of 96.0GB. If the system runs low on memory, jobs may get killed.
2021-10-14 15:40:01 [sysinfo] linux amd64
2021-10-14 15:40:01 [sysinfo] Linux kernel release version: 3.10.0-1160.31.1.el7.x86_64
2021-10-14 15:40:01 [sysinfo] glibc version: 2.17
2021-10-14 15:40:01 [filesys] Pipestance path /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse
2021-10-14 15:40:01 [filesys] Pipestance filesystem type gpfs
2021-10-14 15:40:01 [filesys] 4.0 PB and 10,131,763,083 inodes available.
2021-10-14 15:40:01 [filesys] Pipestance filesystem gpfs mount options: rw,relatime,rw
2021-10-14 15:40:01 [filesys] Bin path /gpfs/share/apps/cellranger/6.0.1/external/martian/bin
2021-10-14 15:40:01 [filesys] Bin filesystem type gpfs
2021-10-14 15:40:01 [filesys] Bin filesystem gpfs mount options: rw,relatime,rw
Serving UI at http://cn-0037:35783?auth=tBIo7I4GOkHqJKkrEKGmzKLXCrhL3iNpsLGpjScIGOI

Running preflight checks (please wait)...
2021-10-14 15:40:01 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT
2021-10-14 15:40:01 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2021-10-14 15:40:01 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL
2021-10-14 15:40:01 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT
2021-10-14 15:40:12 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.CELLRANGER_PREFLIGHT_LOCAL
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX
2021-10-14 15:40:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.FULL_COUNT_INPUTS.WRITE_GENE_INDEX.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG
2021-10-14 15:40:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS
2021-10-14 15:40:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.DISABLE_BAMS.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX
2021-10-14 15:40:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.WRITE_GENE_INDEX.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY
2021-10-14 15:40:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_CHEMISTRY_DETECTOR._GEM_WELL_CHEMISTRY_DETECTOR.DETECT_COUNT_CHEMISTRY.fork0.chnk0.main
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS
2021-10-14 15:40:12 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SANITIZE_MAP_CALLS
2021-10-14 15:40:12 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MAKE_FULL_CONFIG._MAKE_VDJ_CONFIG
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS
2021-10-14 15:40:12 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS
2021-10-14 15:40:12 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.MULTI_SETUP_CHUNKS
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD
2021-10-14 15:40:12 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD
2021-10-14 15:40:12 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.MAKE_SHARD
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2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk27.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk28.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk29.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk30.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk31.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk32.main
2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk33.main
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2021-10-14 15:56:17 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.chnk36.main
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2021-10-14 15:58:44 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION
2021-10-14 15:58:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION.fork0.join
2021-10-14 15:58:47 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.BARCODE_CORRECTION
2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX
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2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SUBSAMPLE_BARCODES
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2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.SET_ALIGNER_SUBSAMPLE_RATE
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2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT
2021-10-14 15:58:47 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.INITIAL_ALIGN_AND_COUNT
2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER._SLFE_PARTIAL_FIRST_PASS.SET_TARGETED_UMI_FILTER
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2021-10-14 15:58:47 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT
2021-10-14 15:58:47 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.split
2021-10-14 15:58:53 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk00.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk01.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk02.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk03.main
2021-10-14 15:58:53 [jobmngr] Need 4 threads to start the next job (3 threads available).  Waiting for jobs to complete.
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2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk05.main
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2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk07.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk08.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk09.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk10.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk11.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk12.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk13.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk14.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk15.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk16.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk17.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk18.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk19.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk20.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk21.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk22.main
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2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk25.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk26.main
2021-10-14 15:58:53 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.chnk27.main
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2021-10-14 15:58:53 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_INDEX
2021-10-14 16:03:55 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (5/37 completed)
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2021-10-14 16:15:22 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (8/37 completed)
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2021-10-14 16:26:39 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (12/37 completed)
2021-10-14 16:31:41 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (14/37 completed)
2021-10-14 16:37:42 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (17/37 completed)
2021-10-14 16:42:47 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (21/37 completed)
2021-10-14 16:48:12 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (21/37 completed)
2021-10-14 16:53:15 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (25/37 completed)
2021-10-14 16:58:37 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (26/37 completed)
2021-10-14 17:03:37 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (29/37 completed)
2021-10-14 17:08:57 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (31/37 completed)
2021-10-14 17:14:04 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (33/37 completed)
2021-10-14 17:19:35 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (35/37 completed)
2021-10-14 17:25:37 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0 chunks running (36/37 completed)
2021-10-14 17:26:40 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT
2021-10-14 17:26:40 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT.fork0.join
2021-10-14 17:26:44 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.ALIGN_AND_COUNT
2021-10-14 17:26:44 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET.fork0.chnk0.main
2021-10-14 17:26:44 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY.fork0.chnk0.main
2021-10-14 17:26:44 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX.fork0.chnk0.main
2021-10-14 17:26:44 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS.fork0.split
2021-10-14 17:26:44 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.split
2021-10-14 17:26:44 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS
2021-10-14 17:26:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS.fork0.chnk0.main
2021-10-14 17:26:51 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk00.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk01.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk02.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk03.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk04.main
2021-10-14 17:26:51 [jobmngr] Need 2 threads to start the next job (1 threads available).  Waiting for jobs to complete.
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk05.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk06.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk07.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk08.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk09.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk10.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk11.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk12.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk13.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk14.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk15.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk16.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk17.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk18.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk19.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk20.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk21.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk22.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk23.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk24.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk25.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk26.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk27.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk28.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk29.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk30.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk31.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk32.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk33.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk34.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk35.main
2021-10-14 17:26:51 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk36.main
2021-10-14 17:27:23 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:27:36 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:27:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS
2021-10-14 17:27:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS.fork0.join
2021-10-14 17:27:40 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX
2021-10-14 17:27:40 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2021-10-14 17:27:40 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split
2021-10-14 17:27:57 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:27:57 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_MATRIX_MARKET
2021-10-14 17:30:37 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:30:45 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:30:48 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:31:20 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:31:20 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:31:23 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:31:52 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:31:52 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0 chunks running (8/37 completed)
2021-10-14 17:32:46 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY.fork0 chunks_running
2021-10-14 17:33:53 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:33:57 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:34:02 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:34:26 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:34:30 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:34:46 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:35:28 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:08 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:08 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0 chunks running (16/37 completed)
2021-10-14 17:37:10 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:37 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:38 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:44 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:37:53 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:38:31 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:38:46 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY.fork0 chunks_running
2021-10-14 17:40:11 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:40:18 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:40:41 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:40:41 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:40:44 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:40:52 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:41:42 [jobmngr] Need 2 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 17:42:12 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0 chunks running (29/37 completed)
2021-10-14 17:43:11 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.WRITE_BARCODE_SUMMARY
2021-10-14 17:43:17 [jobmngr] Need 4 threads to start the next job (2 threads available). Waiting for jobs to complete.
2021-10-14 17:43:27 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.COLLATE_METRICS
2021-10-14 17:43:27 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0 split_running
2021-10-14 17:43:27 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS
2021-10-14 17:43:27 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS.fork0.chnk0.main
2021-10-14 17:43:27 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._MATRIX_COMPUTER.MERGE_METRICS
2021-10-14 17:43:44 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2021-10-14 17:43:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join
2021-10-14 17:45:38 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM
2021-10-14 17:45:38 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM.fork0.join
2021-10-14 17:47:59 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.WRITE_POS_BAM
2021-10-14 17:49:45 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0 join_running
2021-10-14 17:54:33 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL
2021-10-14 17:54:33 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL.fork0.split
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER.HANDLE_GEX_CELLS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO
2021-10-14 17:54:33 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.main
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_T_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.RUN_ENCLONE
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR.SC_VDJ_CONTIG_ASSEMBLER
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.VDJ_B_GEM_WELL_PROCESSOR
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.VLOUPE_PREPROCESS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CLONOTYPE_OUTS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_TXT
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.FILL_CLONOTYPE_INFO
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.VLOUPE_PREPROCESS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COPY_VDJ_REFERENCE
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_ANN_CSV
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONSENSUS_BAM
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.HANDLE_NO_VDJ_REF
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.WRITE_CONCAT_REF_OUTS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_OUTS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_OUTS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER.CREATE_AIRR_TSV
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_T_CLONOTYPE_ASSIGNER
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.REPORT_CONTIGS
2021-10-14 17:54:33 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS
2021-10-14 17:54:33 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.REPORT_CONTIGS
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER.CLONOTYPE_ASSIGNER
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.VDJ_B_CLONOTYPE_ASSIGNER
2021-10-14 17:54:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.SUMMARIZE_VDJ_REPORTS
2021-10-14 17:54:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER.WRITE_CONTIG_PROTO
2021-10-14 17:54:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.SUMMARIZE_VDJ_REPORTS
2021-10-14 17:54:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER.WRITE_CONTIG_PROTO
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_B_REPORTER
2021-10-14 17:54:34 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.VDJ_T_REPORTER
2021-10-14 17:54:44 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL
2021-10-14 17:54:44 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL.fork0.join
2021-10-14 17:54:49 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_MARGINAL
2021-10-14 18:00:35 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0 chunks_running
2021-10-14 18:06:36 [runtime] (update)          ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0 chunks_running
2021-10-14 18:11:16 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO
2021-10-14 18:11:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES
2021-10-14 18:11:16 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES.fork0.split
2021-10-14 18:11:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS
2021-10-14 18:11:16 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.split
2021-10-14 18:11:28 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES
2021-10-14 18:11:28 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES.fork0.join
2021-10-14 18:11:34 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.CALL_TAGS_JIBES
2021-10-14 18:11:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS
2021-10-14 18:11:34 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS.fork0.chnk0.main
2021-10-14 18:11:34 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.SUMMARIZE_MULTIPLEXING_ANALYSIS
2021-10-14 18:11:34 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.SUMMARIZE_MULTIPLEXING_ANALYSIS.fork0.chnk0.main
2021-10-14 18:11:35 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.SUMMARIZE_MULTIPLEXING_ANALYSIS
2021-10-14 18:11:35 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.DETERMINE_SAMPLE_ASSIGNMENTS
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO
2021-10-14 18:11:35 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MOLECULE_INFO
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM
2021-10-14 18:11:35 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_BAM
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES
2021-10-14 18:11:35 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_WRITE_PER_SAMPLE_MATRICES
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS
2021-10-14 18:11:35 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS.fork0.chnk0.main
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS
2021-10-14 18:11:35 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MULTI_COLLATE_PER_SAMPLE_METRICS
2021-10-14 18:11:35 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS
2021-10-14 18:11:35 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS.fork0.chnk0.main
2021-10-14 18:11:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.STRUCTIFY_PER_SAMPLE_OUTS
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES
2021-10-14 18:11:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2021-10-14 18:11:36 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SAMPLE_REPORTER
2021-10-14 18:11:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.DISABLE_FEATURE_STAGES
2021-10-14 18:11:36 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.SAMPLE_ANALYZER
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2021-10-14 18:11:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS
2021-10-14 18:11:36 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_ON_TARGET_READS
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS
2021-10-14 18:11:36 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUBSAMPLE_OFF_TARGET_READS
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2021-10-14 18:11:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2021-10-14 18:11:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2021-10-14 18:11:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.COMPUTE_EXTRA_MULTIPLEXING_METRICS
2021-10-14 18:11:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS
2021-10-14 18:11:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS.fork0.chnk0.main
2021-10-14 18:11:37 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._ASSIGN_TAGS.MERGE_METRICS
2021-10-14 18:11:37 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2021-10-14 18:11:37 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2021-10-14 18:11:37 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2021-10-14 18:11:39 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2021-10-14 18:11:39 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk00.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk01.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk02.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk03.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk04.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk05.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk06.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk07.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk08.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk09.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk10.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk11.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk12.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk13.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk14.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk15.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk16.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk17.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk18.main
2021-10-14 18:11:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.chnk19.main
2021-10-14 18:12:04 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2021-10-14 18:12:04 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA
2021-10-14 18:12:04 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_FBPCA
2021-10-14 18:12:04 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA
2021-10-14 18:12:04 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2021-10-14 18:12:04 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2021-10-14 18:12:04 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2021-10-14 18:12:04 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2021-10-14 18:12:04 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2021-10-14 18:13:52 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2021-10-14 18:13:52 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2021-10-14 18:13:52 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA
2021-10-14 18:13:52 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2021-10-14 18:13:53 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2021-10-14 18:14:26 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA
2021-10-14 18:14:26 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2021-10-14 18:14:27 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_PCA
2021-10-14 18:14:27 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2021-10-14 18:14:27 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2021-10-14 18:14:28 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2021-10-14 18:14:28 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS
2021-10-14 18:14:28 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2021-10-14 18:14:28 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP
2021-10-14 18:14:28 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2021-10-14 18:14:28 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE
2021-10-14 18:14:28 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2021-10-14 18:14:28 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2021-10-14 18:14:28 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2021-10-14 18:14:29 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE
2021-10-14 18:14:29 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2021-10-14 18:14:29 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2021-10-14 18:14:29 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2021-10-14 18:14:29 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk1.main
2021-10-14 18:14:30 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2021-10-14 18:14:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2021-10-14 18:14:33 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP
2021-10-14 18:14:33 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2021-10-14 18:14:33 [jobmngr] Need 4 threads to start the next job (1 threads available).  Waiting for jobs to complete.
2021-10-14 18:14:34 [jobmngr] Need 4 threads to start the next job (2 threads available). Waiting for jobs to complete.
2021-10-14 18:14:34 [jobmngr] Need 4 threads to start the next job (3 threads available). Waiting for jobs to complete.
2021-10-14 18:14:37 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2021-10-14 18:14:37 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2021-10-14 18:14:38 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS
2021-10-14 18:14:38 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2021-10-14 18:14:39 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_KMEANS
2021-10-14 18:14:56 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2021-10-14 18:14:56 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2021-10-14 18:14:56 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2021-10-14 18:14:57 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2021-10-14 18:14:57 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2021-10-14 18:14:58 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2021-10-14 18:14:58 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2021-10-14 18:15:24 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2021-10-14 18:15:24 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2021-10-14 18:15:24 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2021-10-14 18:15:24 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2021-10-14 18:15:24 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2021-10-14 18:15:24 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2021-10-14 18:15:25 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2021-10-14 18:15:25 [jobmngr] Need 4 threads to start the next job (3 threads available).  Waiting for jobs to complete.
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2021-10-14 18:15:25 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2021-10-14 18:15:30 [jobmngr] Need 4 threads to start the next job (3 threads available). Waiting for jobs to complete.
2021-10-14 18:15:30 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP
2021-10-14 18:15:30 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2021-10-14 18:15:54 [jobmngr] Need 4 threads to start the next job (1 threads available). Waiting for jobs to complete.
2021-10-14 18:15:54 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE
2021-10-14 18:15:54 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2021-10-14 18:16:04 [jobmngr] Need 4 threads to start the next job (2 threads available). Waiting for jobs to complete.
2021-10-14 18:16:04 [jobmngr] Need 4 threads to start the next job (3 threads available). Waiting for jobs to complete.
2021-10-14 18:16:05 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS
2021-10-14 18:16:05 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS.fork0.join
2021-10-14 18:19:10 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_TSNE
2021-10-14 18:19:13 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUBSAMPLE_READS
2021-10-14 18:19:13 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS
2021-10-14 18:19:13 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2021-10-14 18:19:14 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_UMAP
2021-10-14 18:19:14 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS
2021-10-14 18:19:14 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2021-10-14 18:20:14 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS
2021-10-14 18:20:15 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS
2021-10-14 18:20:15 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS.fork0.chnk0.main
2021-10-14 18:20:15 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_GEM_WELL_PROCESSOR.COUNT_GEM_WELL_PROCESSOR._BASIC_SC_RNA_COUNTER.MERGE_METRICS
2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.CALCULATE_TARGETED_METRICS
2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._TARGETED_ANALYZER.SUMMARIZE_TARGETED_ANALYSIS
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2021-10-14 18:20:16 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2021-10-14 18:20:16 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER._CRISPR_ANALYZER
2021-10-14 18:21:02 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2021-10-14 18:21:02 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
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2021-10-14 18:21:08 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2021-10-14 18:21:08 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2021-10-14 18:21:08 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2021-10-14 18:21:08 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2021-10-14 18:21:12 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2021-10-14 18:21:12 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.COUNT_ANALYZER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
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2021-10-14 18:21:13 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS
2021-10-14 18:21:13 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2021-10-14 18:21:39 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.SUMMARIZE_REPORTS
2021-10-14 18:21:39 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS
2021-10-14 18:21:39 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.GENERATE_LIBRARY_PLOTS
2021-10-14 18:21:39 [runtime] (disabled)        ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_WEBSUMMARY_BUILDER
2021-10-14 18:21:39 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS
2021-10-14 18:21:39 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.split
2021-10-14 18:21:42 [runtime] (split_complete)  ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS
2021-10-14 18:21:42 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.chnk0.main
2021-10-14 18:23:35 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS
2021-10-14 18:23:35 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS.fork0.join
2021-10-14 18:23:35 [runtime] (join_complete)   ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CLOUPE_PREPROCESS
2021-10-14 18:23:36 [runtime] (ready)           ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE
2021-10-14 18:23:36 [runtime] (run:local)       ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE.fork0.chnk0.main
2021-10-14 18:23:36 [runtime] (chunks_complete) ID.count-PAXUGA_Relapse.SC_RNA_COUNTER_CS.SC_MULTI_CORE.MULTI_REPORTER.CHOOSE_CLOUPE
2021-10-14 18:23:36 [runtime] VDR killed 841 files, 182 GB.

Outputs:
- Run summary HTML:                         /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/web_summary.html
- Run summary CSV:                          /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/metrics_summary.csv
- BAM:                                      /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/possorted_genome_bam.bam
- BAM index:                                /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX:    /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5:   /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX:  /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV:            /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/analysis
- Per-molecule read information:            /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/molecule_info.h5
- CRISPR-specific analysis:                 null
- Loupe Browser file:                       /gpfs/data/sequence/results/aifantislab/2021-runs/2021-09-27/cellranger/count-PAXUGA_Relapse/outs/cloupe.cloupe
- Feature Reference:                        null
- Target Panel File:                        null

2021-10-14 18:23:36 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2021-10-14 18:23:42 Shutting down.
2021-10-14 18:23:42 [jobmngr] Highest memory usage observed: {
  "rss": 62049906688,
  "shared": 547504128,
  "vmem": 5244830519296,
  "text": 228077568,
  "stack": 5238058057728,
  "proc_count": 168
}
