Information for 12-AATTGTGATGCA (Motif 13)

G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A
Reverse Opposite:
C A G T T C A G T G A C G T C A G C A T G T A C G C T A T A G C G T C A C G T A G C A T C G A T
p-value:1e-12
log p-value:-2.978e+01
Information Content per bp:1.695
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif2.25%
Number of Background Sequences with motif507.9
Percentage of Background Sequences with motif1.17%
Average Position of motif in Targets104.2 +/- 59.1bp
Average Position of motif in Background101.1 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0165.1_Sox11_2/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AATTGTGATGCA
AAAATTGTTATGAA
 A C G T A C G T G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AATTGTGATGCA---
CTTTGTTATGCAAAT
 G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T A C G T A C G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

PB0175.1_Sox4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----AATTGTGATGCA
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AATTGTGATGCA---
CATTGTTATGCAAAT
 G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T A C G T A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:5
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AATTGTGATGCA--
----MTGATGCAAT
 G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AATTGTGATGCA--
----ATGATGCAAT
 G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AATTGTGATGCA-
---NATGTTGCAA
 G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T
A C G T A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

PB0172.1_Sox1_2/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AATTGTGATGCA
CTATAATTGTTAGCG-
 A C G T A C G T A C G T A C G T G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G A C G T

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----AATTGTGATGCA
GTATCTATTGTTCTTTA
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A
C A G T C A G T C G T A C G A T A G C T G C A T C G T A G A C T C G A T T C A G C G A T G A C T G T A C G C A T C A G T C G A T C G T A

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AATTGTGATGCA-
TAATTGTTCTAAAC
 A C G T G C T A C G T A G C A T C A G T A T C G C G A T C A T G C G T A C A G T A C T G A G T C G T C A A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C