Information for 3-AACAAGACAC (Motif 14)

G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
Reverse Opposite:
C T A G A C G T C A T G G C A T G A T C G C A T A C G T T C A G C G A T C G A T
p-value:1e-12
log p-value:-2.837e+01
Information Content per bp:1.822
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif277.3
Percentage of Background Sequences with motif0.64%
Average Position of motif in Targets99.4 +/- 54.9bp
Average Position of motif in Background95.8 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AACAAGACAC----
CAAATCCAGACATCACA
 A C G T A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AACAAGACAC
-TCTAGACA-
 G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AACAAGACAC--
TGWAAYCTGABACCB
 A C G T A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AACAAGACAC
--CCAGACAG
 G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.61
Offset:-7
Orientation:forward strand
Alignment:-------AACAAGACAC
ATATCAAAACAAAACA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACAAGACAC------
ATAAATGACACCTATCA
 A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AACAAGACAC----
AACACCAAAACAAAGGA
 A C G T A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AACAAGACAC--
--CCAGACRSVB
 G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AACAAGACAC
GWAAYHTGABMC
 A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0120.1_Foxj1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AACAAGACAC
ATGTCACAACAACAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A A G T C T G C A C G T A C T A G C G T A G T A C C G T A A G T C
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T A C G T