Information for 4-HTAMGARNGA (Motif 17)

G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A
Reverse Opposite:
C A G T A T G C C A G T A G C T G C A T A G T C C A T G G A C T C T G A C A G T
p-value:1e-11
log p-value:-2.653e+01
Information Content per bp:1.498
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif245.1
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets105.0 +/- 56.1bp
Average Position of motif in Background101.4 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--HTAMGARNGA--
AAATAAGAAAAAAC
 A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

PB0106.1_Arid5a_2/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------HTAMGARNGA-
CATACAATACGAAATAA
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

HOXC13/MA0907.1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---HTAMGARNGA
NTTTTACGAGN--
 A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----HTAMGARNGA--
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------HTAMGARNGA
TTCAAAWTAAAAGTC-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A
C A G T G A C T A G T C G C T A C T G A G T C A C G T A A G C T G T C A C T G A C T G A C T G A A C T G A G C T G A T C A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----HTAMGARNGA-
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--HTAMGARNGA---
GTATAAAAGGCGGGG
 A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---HTAMGARNGA----
NTTNTATGAATGTGNNC
 A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-HTAMGARNGA
AAAACAAAGG-
 A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----HTAMGARNGA
NNTNTCATGAATGT
 A C G T A C G T A C G T A C G T G T C A G A C T C T G A G T A C T C A G C G T A T C G A G T C A T A C G G T C A
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T