Information for 15-CAGCCTCGCATG (Motif 18)

A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
Reverse Opposite:
A G T C G T C A A C G T T A C G G A T C A T C G C T G A C T A G A T C G A G T C A G C T A T C G
p-value:1e-11
log p-value:-2.650e+01
Information Content per bp:1.720
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif49.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets105.8 +/- 57.9bp
Average Position of motif in Background107.7 +/- 47.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTCGCATG--
SCAGYCADGCATGAC
 A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTCGCATG---
GCAGCCAAGCGTGACN
 A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0151.1_Myf6_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCTCGCATG
AGCAACAGCCGCACC--
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCTCGCATG
CAGCC-------
 A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTCGCATG
BCAGACWA-----
 A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGCCTCGCATG
CRCCCACGCA--
 A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
G A T C C T G A A G T C T G A C A G T C G T C A A G T C C T A G A G T C G T C A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTCGCATG
CACAGN--------
 A C G T A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGCCTCGCATG
TCAGTCTT-----
 A C G T A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGCCTCGCATG
-AGCCACTCAAG
 A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGCCTCGCATG
KGGCCYCWTD--
 A T G C T C G A C T A G A T G C G A T C G A C T T A G C C T A G A T G C G T C A A C G T T C A G
C A T G C A T G T A C G G T A C A T G C G A T C A T G C G C T A A G C T C T G A A C G T A C G T