Information for 2-TTGAAGAG (Motif 35)

A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C G T A G T C C T G A C G T A
p-value:1e-7
log p-value:-1.638e+01
Information Content per bp:1.934
Number of Target Sequences with motif118.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif441.8
Percentage of Background Sequences with motif1.02%
Average Position of motif in Targets105.4 +/- 55.3bp
Average Position of motif in Background96.1 +/- 56.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAGAG-
NTTTTACGAGN
 A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----TTGAAGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTGAAGAG----
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTGAAGAG
-NGAAGC-
 A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTGAAGAG-
ANTTTTACGACC
 A C G T A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAGAG
NTTTTACGAC
 A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTGAAGAG--
BTBRAGTGSN
 A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGAAGAG-
NTCAAGTGG
 A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

PH0134.1_Pbx1/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------TTGAAGAG---
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TTGAAGAG-
NTTTTACGACC
 A C G T A C G T A C G T A G C T A C T G C G T A G T C A A C T G C G T A A C T G A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C