Information for 25-RCATAATTCCCT (Motif 41)

C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T
Reverse Opposite:
C G T A C T A G A C T G A C T G G T C A G C T A A C G T A C G T C T G A C G A T A C T G A G C T
p-value:1e-3
log p-value:-8.033e+00
Information Content per bp:1.778
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets146.1 +/- 45.9bp
Average Position of motif in Background159.6 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0176.1_Sox5_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--RCATAATTCCCT-
TATCATAATTAAGGA
 A C G T A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RCATAATTCCCT--
TCGCGATAATTACCGAC
 A C G T A C G T A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

MEOX2/MA0706.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RCATAATTCCCT
-NTTAATTACN-
 C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T
A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RCATAATTCCCT---
AAGGTAATTACCTAAT
 A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T A C G T A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PH0023.1_Dlx4/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---RCATAATTCCCT--
GCGCTATAATTACCGAC
 A C G T A C G T A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

PH0072.1_Hoxc8/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RCATAATTCCCT---
ACNNTAATTACNNCAN
 A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T A C G T A C G T
T G C A G T A C C T A G C A G T G A C T G T C A G C T A C A G T C A G T C T G A G T A C A G T C G A T C G T A C C G T A T G C A

PH0021.1_Dlx2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RCATAATTCCCT---
GGAATAATTACCTCAG
 A C G T C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T A C G T A C G T A C G T
T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G

Dlx2/MA0885.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RCATAATTCCCT
--NTAATTGN--
 C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T
A C G T A C G T C G A T G C A T T G C A C G T A C A G T C A G T C T A G A T G C A C G T A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:RCATAATTCCCT
-CCTAATTATC-
 C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T
A C G T T G A C T G A C G A C T T G C A G C T A C G A T A C G T G C T A A C G T A T G C A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:RCATAATTCCCT
-GNTAATTAGN-
 C T G A A G T C C G T A A G C T T C G A C G T A C A G T A C G T T G A C A G T C A G T C G C A T
A C G T A T C G C A G T G A C T T G C A C T G A G C A T A C G T C T G A A T C G A G T C A C G T