Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 6855)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43596)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-22	-5.151e+01	0.0000	109.0	1.59%	226.7	0.52%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-11	-2.747e+01	0.0000	107.0	1.56%	315.5	0.73%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-7.864e+00	0.0531	2595.0	37.86%	15551.2	35.90%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-6.691e+00	0.1285	202.0	2.95%	1025.6	2.37%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-6.618e+00	0.1285	454.0	6.62%	2493.6	5.76%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-5.472e+00	0.2901	256.0	3.74%	1368.6	3.16%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-2	-5.418e+00	0.2901	1734.0	25.30%	10369.1	23.94%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-2	-5.407e+00	0.2901	288.0	4.20%	1557.2	3.59%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-2	-5.191e+00	0.2901	570.0	8.32%	3245.3	7.49%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-2	-5.126e+00	0.2901	959.0	13.99%	5613.0	12.96%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-4.803e+00	0.3090	177.0	2.58%	929.2	2.14%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.735e+00	0.3090	1072.0	15.64%	6330.7	14.61%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-4.661e+00	0.3090	1581.0	23.07%	9479.6	21.88%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.651e+00	0.3090	1522.0	22.21%	9114.2	21.04%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1	-4.584e+00	0.3090	550.0	8.02%	3154.5	7.28%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-4.580e+00	0.3090	42.0	0.61%	180.4	0.42%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.451e+00	0.3090	1676.0	24.45%	10086.8	23.28%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-1	-4.261e+00	0.3244	539.0	7.86%	3104.4	7.17%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-4.257e+00	0.3244	119.0	1.74%	610.6	1.41%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-4.194e+00	0.3244	114.0	1.66%	583.9	1.35%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.185e+00	0.3244	1320.0	19.26%	7900.6	18.24%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-4.163e+00	0.3244	1001.0	14.60%	5933.4	13.70%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.157e+00	0.3244	673.0	9.82%	3924.2	9.06%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-4.002e+00	0.3244	717.0	10.46%	4202.6	9.70%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.919e+00	0.3288	1665.0	24.29%	10064.6	23.23%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.783e+00	0.3622	1269.0	18.51%	7617.8	17.58%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.756e+00	0.3622	230.0	3.36%	1272.7	2.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.750e+00	0.3622	1132.0	16.52%	6772.9	15.63%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.722e+00	0.3622	209.0	3.05%	1149.3	2.65%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.695e+00	0.3622	879.0	12.82%	5216.7	12.04%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.654e+00	0.3622	310.0	4.52%	1753.8	4.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.616e+00	0.3622	48.0	0.70%	225.2	0.52%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.562e+00	0.3622	454.0	6.62%	2626.3	6.06%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.558e+00	0.3622	220.0	3.21%	1220.4	2.82%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.549e+00	0.3622	699.0	10.20%	4121.3	9.51%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-3.488e+00	0.3622	9.0	0.13%	28.0	0.06%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.463e+00	0.3622	433.0	6.32%	2504.6	5.78%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-3.420e+00	0.3622	1188.0	17.33%	7146.2	16.50%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.371e+00	0.3648	676.0	9.86%	3992.7	9.22%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-3.225e+00	0.4114	1081.0	15.77%	6500.4	15.01%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.216e+00	0.4114	426.0	6.22%	2475.8	5.72%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.194e+00	0.4114	182.0	2.66%	1008.5	2.33%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-3.189e+00	0.4114	572.0	8.35%	3367.4	7.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.189e+00	0.4114	50.0	0.73%	243.8	0.56%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.129e+00	0.4114	758.0	11.06%	4513.1	10.42%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-3.121e+00	0.4114	516.0	7.53%	3029.2	6.99%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-3.101e+00	0.4114	2476.0	36.12%	15222.1	35.14%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.067e+00	0.4114	142.0	2.07%	776.1	1.79%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.886e+00	0.4714	772.0	11.26%	4618.4	10.66%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-2.871e+00	0.4714	34.0	0.50%	160.3	0.37%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-2.835e+00	0.4767	480.0	7.00%	2827.8	6.53%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-2.809e+00	0.4799	208.0	3.03%	1178.6	2.72%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-2.792e+00	0.4799	514.0	7.50%	3038.6	7.01%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-2.777e+00	0.4799	514.0	7.50%	3039.5	7.02%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.746e+00	0.4831	482.0	7.03%	2845.5	6.57%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-2.733e+00	0.4831	753.0	10.99%	4513.9	10.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.671e+00	0.5023	1252.0	18.27%	7614.8	17.58%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-1	-2.640e+00	0.5093	574.0	8.37%	3417.3	7.89%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.622e+00	0.5099	203.0	2.96%	1156.5	2.67%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.608e+00	0.5099	137.0	2.00%	762.1	1.76%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.593e+00	0.5099	856.0	12.49%	5163.0	11.92%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.587e+00	0.5099	939.0	13.70%	5677.2	13.11%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-2.585e+00	0.5099	757.0	11.04%	4550.6	10.50%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.571e+00	0.5099	783.0	11.42%	4712.0	10.88%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.550e+00	0.5099	1448.0	21.13%	8849.6	20.43%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.528e+00	0.5099	196.0	2.86%	1118.6	2.58%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-1	-2.487e+00	0.5137	1246.0	18.18%	7596.1	17.53%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.457e+00	0.5216	538.0	7.85%	3209.9	7.41%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.406e+00	0.5413	170.0	2.48%	968.0	2.23%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.393e+00	0.5413	83.0	1.21%	450.5	1.04%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.386e+00	0.5413	23.0	0.34%	108.0	0.25%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.359e+00	0.5437	146.0	2.13%	825.3	1.91%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-2.344e+00	0.5439	407.0	5.94%	2412.4	5.57%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-1	-2.335e+00	0.5439	141.0	2.06%	796.8	1.84%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.291e+00	0.5585	522.0	7.62%	3123.9	7.21%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.254e+00	0.5716	570.0	8.32%	3422.8	7.90%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.247e+00	0.5716	489.0	7.13%	2923.3	6.75%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.244e+00	0.5716	7.0	0.10%	25.4	0.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.244e+00	0.5716	7.0	0.10%	25.9	0.06%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.241e+00	0.5716	614.0	8.96%	3695.3	8.53%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.220e+00	0.5716	560.0	8.17%	3363.1	7.76%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.195e+00	0.5716	14.0	0.20%	61.7	0.14%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.159e+00	0.5758	732.0	10.68%	4433.4	10.23%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.134e+00	0.5832	455.0	6.64%	2722.1	6.28%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.121e+00	0.5839	74.0	1.08%	405.4	0.94%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.057e+00	0.6152	73.0	1.07%	401.1	0.93%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.046e+00	0.6152	38.0	0.55%	197.7	0.46%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.032e+00	0.6165	116.0	1.69%	658.7	1.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.026e+00	0.6165	559.0	8.16%	3373.2	7.79%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.017e+00	0.6165	375.0	5.47%	2238.1	5.17%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.964e+00	0.6383	851.0	12.42%	5192.2	11.99%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.963e+00	0.6383	912.0	13.31%	5572.6	12.86%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.960e+00	0.6383	429.0	6.26%	2575.3	5.94%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.945e+00	0.6383	262.0	3.82%	1549.8	3.58%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.928e+00	0.6383	160.0	2.33%	928.0	2.14%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.926e+00	0.6383	197.0	2.87%	1153.5	2.66%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-1.921e+00	0.6383	2217.0	32.35%	13753.9	31.75%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.903e+00	0.6383	95.0	1.39%	537.8	1.24%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.884e+00	0.6383	120.0	1.75%	688.0	1.59%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.851e+00	0.6504	206.0	3.01%	1212.2	2.80%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.849e+00	0.6504	92.0	1.34%	521.0	1.20%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.847e+00	0.6504	276.0	4.03%	1641.4	3.79%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.830e+00	0.6504	353.0	5.15%	2116.0	4.88%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.794e+00	0.6623	204.0	2.98%	1203.8	2.78%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.785e+00	0.6623	116.0	1.69%	668.4	1.54%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.783e+00	0.6623	717.0	10.46%	4377.3	10.10%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.782e+00	0.6623	246.0	3.59%	1461.2	3.37%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.777e+00	0.6623	533.0	7.78%	3234.7	7.47%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.767e+00	0.6623	489.0	7.13%	2962.8	6.84%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.765e+00	0.6623	231.0	3.37%	1370.9	3.16%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.753e+00	0.6623	63.0	0.92%	351.7	0.81%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.700e+00	0.6751	44.0	0.64%	240.0	0.55%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.668e+00	0.6913	95.0	1.39%	546.7	1.26%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.655e+00	0.6937	133.0	1.94%	777.1	1.79%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.655e+00	0.6937	993.0	14.49%	6114.6	14.11%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.654e+00	0.6937	876.0	12.78%	5383.0	12.43%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.648e+00	0.6937	222.0	3.24%	1322.5	3.05%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.635e+00	0.6937	332.0	4.84%	2001.4	4.62%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.627e+00	0.6937	129.0	1.88%	754.8	1.74%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.613e+00	0.6937	37.0	0.54%	201.6	0.47%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.603e+00	0.6937	223.0	3.25%	1331.1	3.07%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.595e+00	0.6937	245.0	3.57%	1467.7	3.39%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.528e+00	0.7300	790.0	11.53%	4861.8	11.22%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.511e+00	0.7368	1567.0	22.86%	9733.5	22.47%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.509e+00	0.7368	51.0	0.74%	287.1	0.66%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.505e+00	0.7368	487.0	7.11%	2975.0	6.87%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.502e+00	0.7368	108.0	1.58%	632.0	1.46%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.460e+00	0.7508	157.0	2.29%	934.5	2.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.447e+00	0.7552	46.0	0.67%	259.3	0.60%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.423e+00	0.7676	473.0	6.90%	2895.9	6.68%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.423e+00	0.7676	36.0	0.53%	200.1	0.46%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.421e+00	0.7676	5.0	0.07%	21.8	0.05%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.410e+00	0.7676	3186.0	46.48%	19953.6	46.06%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.407e+00	0.7676	83.0	1.21%	484.3	1.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.377e+00	0.7740	205.0	2.99%	1235.5	2.85%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.364e+00	0.7780	658.0	9.60%	4056.9	9.36%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.363e+00	0.7780	920.0	13.42%	5696.4	13.15%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.351e+00	0.7780	47.0	0.69%	268.4	0.62%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.319e+00	0.7962	46.0	0.67%	263.2	0.61%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.302e+00	0.8042	259.0	3.78%	1575.9	3.64%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.295e+00	0.8045	348.0	5.08%	2129.3	4.92%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.293e+00	0.8045	842.0	12.28%	5217.6	12.04%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.290e+00	0.8045	750.0	10.94%	4641.8	10.72%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.290e+00	0.8045	156.0	2.28%	938.3	2.17%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.285e+00	0.8045	80.0	1.17%	471.1	1.09%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.270e+00	0.8045	52.0	0.76%	301.6	0.70%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.251e+00	0.8058	286.0	4.17%	1747.6	4.03%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.239e+00	0.8104	439.0	6.41%	2702.4	6.24%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.235e+00	0.8104	1253.0	18.28%	7806.6	18.02%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.233e+00	0.8104	112.0	1.63%	670.2	1.55%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.220e+00	0.8104	964.0	14.06%	5993.3	13.83%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.217e+00	0.8104	709.0	10.34%	4394.5	10.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.217e+00	0.8104	529.0	7.72%	3267.2	7.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.207e+00	0.8104	175.0	2.55%	1061.1	2.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.166e+00	0.8324	451.0	6.58%	2785.6	6.43%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.158e+00	0.8335	548.0	8.00%	3393.1	7.83%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.156e+00	0.8335	132.0	1.93%	798.8	1.84%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.152e+00	0.8335	746.0	10.88%	4635.6	10.70%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.146e+00	0.8335	403.0	5.88%	2487.5	5.74%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.142e+00	0.8335	172.0	2.51%	1047.5	2.42%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.140e+00	0.8335	772.0	11.26%	4800.2	11.08%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.125e+00	0.8335	39.0	0.57%	228.0	0.53%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.096e+00	0.8484	370.0	5.40%	2286.4	5.28%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.096e+00	0.8484	1048.0	15.29%	6542.0	15.10%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.082e+00	0.8504	2204.0	32.16%	13826.8	31.92%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.067e+00	0.8577	275.0	4.01%	1695.8	3.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.054e+00	0.8636	294.0	4.29%	1815.5	4.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.052e+00	0.8636	520.0	7.59%	3231.5	7.46%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.034e+00	0.8709	185.0	2.70%	1136.7	2.62%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.018e+00	0.8796	119.0	1.74%	726.6	1.68%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.018e+00	0.8796	330.0	4.81%	2044.4	4.72%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.012e+00	0.8796	46.0	0.67%	275.0	0.63%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.989e-01	0.8814	95.0	1.39%	578.2	1.33%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-9.927e-01	0.8817	53.0	0.77%	318.8	0.74%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.664e-01	0.9001	426.0	6.22%	2652.8	6.12%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.658e-01	0.9001	458.0	6.68%	2853.2	6.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.579e-01	0.9001	1129.0	16.47%	7076.8	16.34%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-9.330e-01	0.9149	5.0	0.07%	26.2	0.06%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-9.291e-01	0.9149	1097.0	16.01%	6881.0	15.88%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.236e-01	0.9149	428.0	6.24%	2670.9	6.17%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-9.141e-01	0.9169	2937.0	42.85%	18495.1	42.69%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-9.114e-01	0.9169	359.0	5.24%	2238.4	5.17%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-8.866e-01	0.9322	957.0	13.96%	6006.5	13.87%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.863e-01	0.9322	40.0	0.58%	242.3	0.56%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.829e-01	0.9322	255.0	3.72%	1588.8	3.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.670e-01	0.9353	199.0	2.90%	1238.2	2.86%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.614e-01	0.9356	451.0	6.58%	2823.2	6.52%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-8.610e-01	0.9356	1568.0	22.88%	9865.0	22.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.555e-01	0.9356	159.0	2.32%	988.2	2.28%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-8.533e-01	0.9356	420.0	6.13%	2629.8	6.07%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.531e-01	0.9356	47.0	0.69%	288.0	0.66%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.514e-01	0.9356	121.0	1.77%	750.3	1.73%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.402e-01	0.9356	414.0	6.04%	2593.8	5.99%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.326e-01	0.9356	397.0	5.79%	2487.2	5.74%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-8.301e-01	0.9356	2077.0	30.30%	13086.7	30.21%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.136e-01	0.9363	63.0	0.92%	389.7	0.90%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-8.077e-01	0.9370	58.0	0.85%	358.9	0.83%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.063e-01	0.9370	80.0	1.17%	496.1	1.15%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-8.047e-01	0.9370	401.0	5.85%	2516.2	5.81%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.033e-01	0.9370	1049.0	15.30%	6603.2	15.24%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.800e-01	0.9442	621.0	9.06%	3907.7	9.02%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.783e-01	0.9442	402.0	5.87%	2526.9	5.83%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.767e-01	0.9442	41.0	0.60%	254.0	0.59%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-7.759e-01	0.9442	108.0	1.58%	674.0	1.56%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-7.724e-01	0.9442	131.0	1.91%	819.8	1.89%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.648e-01	0.9442	28.0	0.41%	172.9	0.40%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.395e-01	0.9547	21.0	0.31%	129.5	0.30%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.372e-01	0.9547	248.0	3.62%	1560.2	3.60%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.366e-01	0.9547	552.0	8.05%	3479.5	8.03%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-7.303e-01	0.9547	181.0	2.64%	1138.1	2.63%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.301e-01	0.9547	418.0	6.10%	2634.2	6.08%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.228e-01	0.9547	201.0	2.93%	1265.6	2.92%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.228e-01	0.9547	140.0	2.04%	880.7	2.03%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-7.148e-01	0.9547	284.0	4.14%	1790.3	4.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.082e-01	0.9547	158.0	2.31%	995.9	2.30%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.066e-01	0.9547	148.0	2.16%	932.1	2.15%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.947e-01	0.9547	476.0	6.94%	3006.8	6.94%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.935e-01	0.9547	91.0	1.33%	573.2	1.32%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.889e-01	0.9547	473.0	6.90%	2988.8	6.90%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.884e-01	0.9547	264.0	3.85%	1667.3	3.85%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.870e-01	0.9547	105.0	1.53%	662.4	1.53%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.851e-01	0.9547	52.0	0.76%	327.8	0.76%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.827e-01	0.9547	21.0	0.31%	131.9	0.30%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-6.749e-01	0.9547	2126.0	31.02%	13440.2	31.02%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-6.719e-01	0.9547	316.0	4.61%	1998.9	4.61%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-6.629e-01	0.9547	254.0	3.71%	1607.8	3.71%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.619e-01	0.9547	217.0	3.17%	1373.6	3.17%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.574e-01	0.9547	179.0	2.61%	1133.3	2.62%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.496e-01	0.9547	759.0	11.07%	4804.3	11.09%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.432e-01	0.9547	434.0	6.33%	2750.0	6.35%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.432e-01	0.9547	813.0	11.86%	5147.0	11.88%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.295e-01	0.9547	1076.0	15.70%	6814.7	15.73%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-6.253e-01	0.9547	151.0	2.20%	959.9	2.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.163e-01	0.9553	189.0	2.76%	1201.9	2.77%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.133e-01	0.9553	65.0	0.95%	414.1	0.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.133e-01	0.9553	65.0	0.95%	414.1	0.96%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-6.032e-01	0.9556	16.0	0.23%	102.3	0.24%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.956e-01	0.9588	762.0	11.12%	4836.0	11.16%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.898e-01	0.9604	37.0	0.54%	237.9	0.55%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.892e-01	0.9604	217.0	3.17%	1382.5	3.19%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-5.858e-01	0.9604	256.0	3.74%	1630.6	3.76%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.736e-01	0.9640	320.0	4.67%	2039.0	4.71%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.724e-01	0.9640	331.0	4.83%	2108.1	4.87%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.722e-01	0.9640	127.0	1.85%	812.6	1.88%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.673e-01	0.9640	297.0	4.33%	1893.6	4.37%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.607e-01	0.9640	1027.0	14.98%	6522.7	15.06%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.438e-01	0.9730	717.0	10.46%	4562.0	10.53%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-5.436e-01	0.9730	363.0	5.30%	2316.1	5.35%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.368e-01	0.9730	1714.0	25.01%	10879.3	25.11%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.303e-01	0.9744	25.0	0.36%	163.9	0.38%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-5.245e-01	0.9762	753.0	10.99%	4795.9	11.07%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.217e-01	0.9762	22.0	0.32%	144.5	0.33%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.146e-01	0.9781	119.0	1.74%	767.5	1.77%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-5.145e-01	0.9781	1208.0	17.62%	7682.4	17.73%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-5.129e-01	0.9781	331.0	4.83%	2118.8	4.89%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.091e-01	0.9781	424.0	6.19%	2710.8	6.26%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.046e-01	0.9781	35.0	0.51%	229.9	0.53%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.046e-01	0.9781	35.0	0.51%	229.9	0.53%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.026e-01	0.9781	2032.0	29.65%	12904.3	29.79%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.014e-01	0.9781	684.0	9.98%	4363.6	10.07%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-4.951e-01	0.9781	77.0	1.12%	501.0	1.16%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.878e-01	0.9781	368.0	5.37%	2358.0	5.44%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.828e-01	0.9781	611.0	8.91%	3904.2	9.01%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.803e-01	0.9781	137.0	2.00%	886.7	2.05%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.782e-01	0.9781	451.0	6.58%	2888.0	6.67%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-4.760e-01	0.9781	550.0	8.02%	3518.1	8.12%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-4.759e-01	0.9781	846.0	12.34%	5398.8	12.46%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.691e-01	0.9781	898.0	13.10%	5730.5	13.23%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.689e-01	0.9781	67.0	0.98%	438.8	1.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.686e-01	0.9781	83.0	1.21%	541.4	1.25%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-4.647e-01	0.9781	700.0	10.21%	4474.3	10.33%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.634e-01	0.9781	6.0	0.09%	41.3	0.10%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-4.589e-01	0.9781	944.0	13.77%	6025.8	13.91%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.525e-01	0.9781	193.0	2.82%	1248.5	2.88%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-4.390e-01	0.9781	636.0	9.28%	4074.0	9.40%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.378e-01	0.9781	210.0	3.06%	1359.1	3.14%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-4.227e-01	0.9794	22.0	0.32%	149.1	0.34%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-4.202e-01	0.9794	839.0	12.24%	5370.4	12.40%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.129e-01	0.9819	500.0	7.30%	3215.9	7.42%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.093e-01	0.9820	253.0	3.69%	1639.6	3.78%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.053e-01	0.9824	371.0	5.41%	2394.4	5.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.034e-01	0.9824	558.0	8.14%	3587.0	8.28%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-4.033e-01	0.9824	430.0	6.27%	2771.6	6.40%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.016e-01	0.9824	41.0	0.60%	275.8	0.64%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.014e-01	0.9824	1939.0	28.29%	12356.8	28.52%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-3.941e-01	0.9824	616.0	8.99%	3959.1	9.14%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.870e-01	0.9824	330.0	4.81%	2136.0	4.93%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.839e-01	0.9824	627.0	9.15%	4032.3	9.31%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.794e-01	0.9824	610.0	8.90%	3925.4	9.06%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.776e-01	0.9824	147.0	2.14%	964.3	2.23%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.737e-01	0.9824	46.0	0.67%	311.0	0.72%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.675e-01	0.9824	377.0	5.50%	2441.0	5.63%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.640e-01	0.9824	138.0	2.01%	908.5	2.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.561e-01	0.9863	91.0	1.33%	605.5	1.40%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-3.502e-01	0.9887	624.0	9.10%	4024.0	9.29%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.486e-01	0.9887	326.0	4.76%	2119.2	4.89%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.484e-01	0.9887	60.0	0.88%	404.8	0.93%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.479e-01	0.9887	49.0	0.71%	332.8	0.77%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.451e-01	0.9887	324.0	4.73%	2107.5	4.86%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.387e-01	0.9887	335.0	4.89%	2179.8	5.03%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-3.383e-01	0.9887	768.0	11.21%	4945.9	11.42%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.375e-01	0.9887	49.0	0.71%	333.3	0.77%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-3.318e-01	0.9887	370.0	5.40%	2405.4	5.55%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.282e-01	0.9887	847.0	12.36%	5452.7	12.59%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.265e-01	0.9887	352.0	5.14%	2292.0	5.29%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.168e-01	0.9887	674.0	9.83%	4353.2	10.05%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-3.143e-01	0.9887	21.0	0.31%	149.8	0.35%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-3.134e-01	0.9887	454.0	6.62%	2948.7	6.81%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-3.111e-01	0.9887	599.0	8.74%	3876.1	8.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.108e-01	0.9887	93.0	1.36%	624.7	1.44%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.075e-01	0.9887	601.0	8.77%	3890.6	8.98%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.929e-01	0.9900	9.0	0.13%	68.2	0.16%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.928e-01	0.9900	1708.0	24.92%	10943.8	25.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.879e-01	0.9900	57.0	0.83%	391.0	0.90%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.869e-01	0.9900	94.0	1.37%	635.0	1.47%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.864e-01	0.9900	21.0	0.31%	151.6	0.35%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.860e-01	0.9900	864.0	12.61%	5577.4	12.87%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.812e-01	0.9900	34.0	0.50%	239.5	0.55%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.797e-01	0.9900	92.0	1.34%	622.1	1.44%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.765e-01	0.9900	63.0	0.92%	432.4	1.00%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.753e-01	0.9900	42.0	0.61%	293.2	0.68%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.739e-01	0.9900	13.0	0.19%	97.9	0.23%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.682e-01	0.9900	4.0	0.06%	33.1	0.08%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.680e-01	0.9900	7.0	0.10%	55.5	0.13%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.669e-01	0.9900	261.0	3.81%	1721.5	3.97%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.562e-01	0.9900	179.0	2.61%	1193.4	2.75%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.557e-01	0.9900	214.0	3.12%	1420.0	3.28%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.541e-01	0.9900	500.0	7.30%	3262.8	7.53%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.520e-01	0.9900	167.0	2.44%	1116.5	2.58%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.454e-01	0.9900	471.0	6.87%	3079.9	7.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.396e-01	0.9900	19.0	0.28%	141.0	0.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.300e-01	0.9907	1.0	0.01%	10.4	0.02%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.292e-01	0.9907	13.0	0.19%	100.9	0.23%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.268e-01	0.9907	1490.0	21.74%	9595.6	22.15%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.254e-01	0.9907	131.0	1.91%	887.6	2.05%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.114e-01	0.9974	31.0	0.45%	226.7	0.52%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.065e-01	0.9993	9.0	0.13%	73.3	0.17%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.061e-01	0.9993	432.0	6.30%	2843.3	6.56%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-2.035e-01	0.9993	324.0	4.73%	2148.0	4.96%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.024e-01	0.9993	24.0	0.35%	179.1	0.41%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.956e-01	0.9993	56.0	0.82%	397.4	0.92%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.949e-01	0.9993	2278.0	33.24%	14624.7	33.76%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.901e-01	0.9993	1204.0	17.57%	7797.0	18.00%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.831e-01	1.0000	10.0	0.15%	82.8	0.19%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.770e-01	1.0000	583.0	8.51%	3828.7	8.84%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.731e-01	1.0000	180.0	2.63%	1221.9	2.82%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.707e-01	1.0000	89.0	1.30%	622.2	1.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.655e-01	1.0000	567.0	8.27%	3731.6	8.61%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.646e-01	1.0000	806.0	11.76%	5267.9	12.16%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.641e-01	1.0000	16.0	0.23%	127.7	0.29%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.622e-01	1.0000	1.0	0.01%	12.5	0.03%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.597e-01	1.0000	23.0	0.34%	177.6	0.41%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.594e-01	1.0000	871.0	12.71%	5687.9	13.13%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.555e-01	1.0000	151.0	2.20%	1036.4	2.39%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-1.549e-01	1.0000	727.0	10.61%	4766.8	11.00%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.546e-01	1.0000	274.0	4.00%	1841.1	4.25%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.471e-01	1.0000	174.0	2.54%	1190.4	2.75%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.467e-01	1.0000	241.0	3.52%	1629.3	3.76%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.432e-01	1.0000	117.0	1.71%	815.3	1.88%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.424e-01	1.0000	85.0	1.24%	602.2	1.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.420e-01	1.0000	36.0	0.53%	270.2	0.62%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.390e-01	1.0000	139.0	2.03%	962.4	2.22%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.390e-01	1.0000	368.0	5.37%	2459.4	5.68%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.389e-01	1.0000	773.0	11.28%	5072.6	11.71%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.386e-01	1.0000	118.0	1.72%	823.0	1.90%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-1.368e-01	1.0000	1.0	0.01%	13.7	0.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.304e-01	1.0000	7.0	0.10%	64.2	0.15%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.280e-01	1.0000	290.0	4.23%	1957.8	4.52%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.243e-01	1.0000	98.0	1.43%	694.2	1.60%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.215e-01	1.0000	76.0	1.11%	547.2	1.26%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.118e-01	1.0000	111.0	1.62%	785.7	1.81%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.110e-01	1.0000	385.0	5.62%	2585.4	5.97%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.103e-01	1.0000	7.0	0.10%	66.8	0.15%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.041e-01	1.0000	126.0	1.84%	888.2	2.05%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.041e-01	1.0000	45.0	0.66%	340.2	0.79%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.038e-01	1.0000	221.0	3.22%	1517.3	3.50%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.369e-02	1.0000	21.0	0.31%	173.6	0.40%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-9.009e-02	1.0000	170.0	2.48%	1187.8	2.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.916e-02	1.0000	106.0	1.55%	760.4	1.76%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-8.894e-02	1.0000	824.0	12.02%	5442.4	12.56%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.540e-02	1.0000	38.0	0.55%	296.2	0.68%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.396e-02	1.0000	32.0	0.47%	254.2	0.59%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.178e-02	1.0000	38.0	0.55%	297.1	0.69%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.883e-02	1.0000	211.0	3.08%	1465.4	3.38%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.381e-02	1.0000	267.0	3.90%	1838.9	4.24%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.155e-02	1.0000	92.0	1.34%	673.8	1.56%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.083e-02	1.0000	144.0	2.10%	1024.4	2.36%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.599e-02	1.0000	356.0	5.19%	2429.1	5.61%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.412e-02	1.0000	69.0	1.01%	519.7	1.20%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-5.630e-02	1.0000	424.0	6.19%	2884.8	6.66%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.626e-02	1.0000	3.0	0.04%	39.3	0.09%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.217e-02	1.0000	10.0	0.15%	99.0	0.23%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.901e-02	1.0000	25.0	0.36%	214.2	0.49%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.884e-02	1.0000	529.0	7.72%	3579.4	8.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.655e-02	1.0000	228.0	3.33%	1603.6	3.70%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-4.545e-02	1.0000	114.0	1.66%	838.1	1.93%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.467e-02	1.0000	393.0	5.73%	2695.5	6.22%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.313e-02	1.0000	1.0	0.01%	20.7	0.05%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.043e-02	1.0000	24.0	0.35%	210.4	0.49%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.944e-02	1.0000	410.0	5.98%	2814.1	6.50%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-3.730e-02	1.0000	358.0	5.22%	2475.3	5.71%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-3.499e-02	1.0000	87.0	1.27%	661.4	1.53%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.928e-02	1.0000	46.0	0.67%	378.0	0.87%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.809e-02	1.0000	14.0	0.20%	139.9	0.32%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.690e-02	1.0000	152.0	2.22%	1116.0	2.58%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.139e-02	1.0000	85.0	1.24%	661.6	1.53%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.391e-02	1.0000	389.0	5.68%	2732.4	6.31%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.113e-02	1.0000	633.0	9.24%	4354.2	10.05%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.389e-03	1.0000	376.0	5.49%	2670.5	6.16%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.124e-03	1.0000	70.0	1.02%	585.9	1.35%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.031e-03	1.0000	1854.0	27.05%	12305.4	28.41%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.071e-03	1.0000	392.0	5.72%	2839.7	6.56%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.756e-03	1.0000	15.0	0.22%	182.9	0.42%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.3	0.01%