Sample FastQC (raw)_mqc-generalstats-fastqc_raw-percent_duplicates FastQC (raw)_mqc-generalstats-fastqc_raw-percent_gc FastQC (raw)_mqc-generalstats-fastqc_raw-avg_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-median_sequence_length FastQC (raw)_mqc-generalstats-fastqc_raw-percent_fails FastQC (raw)_mqc-generalstats-fastqc_raw-total_sequences Cutadapt_mqc-generalstats-cutadapt-percent_trimmed Bowtie2 (target)_mqc-generalstats-bowtie2_target-overall_alignment_rate Bowtie2 (spike-in)_mqc-generalstats-bowtie2_spike_in-overall_alignment_rate Picard duplication stats: Mark Duplicates_mqc-generalstats-picard_duplication_stats_mark_duplicates-PERCENT_DUPLICATION Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-error_rate Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-non_primary_alignments Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-reads_mapped Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-reads_mapped_percent Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-reads_properly_paired_percent Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-reads_MQ0_percent Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-raw_total_sequences Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-flagstat_total Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-mapped_passed Samtools alignment scores_mqc-generalstats-samtools_alignment_scores-mapped_passed_pct FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_duplicates FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_gc FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-avg_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-median_sequence_length FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-percent_fails FastQC (trimmed)_mqc-generalstats-fastqc_trimmed-total_sequences K562_100K_Clink_GATA2_R1 29.12056925819732 44.0 151.0 151 27.27272727272727 33064096.0 5.460337015860595 88.91 1.36 0.270594 K562_100K_Clink_GATA2_R1_1 28.307701134976057 43.0 143.9384923986944 151 9.090909090909092 32774567.0 K562_100K_Clink_GATA2_R1_2 28.45709265758687 43.0 143.88019475589107 151 18.181818181818183 32774567.0 K562_100K_Clink_H3K4Me3_R1 40.960770837160695 51.0 151.0 151 18.181818181818183 36599782.0 4.8974054233691104 87.52 1.59 0.292162 K562_100K_Clink_H3K4Me3_R1_1 40.070042458339515 51.0 145.7430032470064 151 9.090909090909092 36037502.0 K562_100K_Clink_H3K4Me3_R1_2 40.51266691645987 51.0 145.67289111770287 151 18.181818181818183 36037502.0 K562_100K_Clink_IgG_R1 62.68502547511875 45.0 151.0 151 18.181818181818183 30007394.0 5.563045186187173 78.67 3.56 0.516837 0.002678546 0.0 18211134.0 100.0 100.0 0.0 18211134.0 18211134 18211134 100.0 K562_100K_Clink_IgG_R1_1 62.21395568803783 45.0 142.94083600761942 151 18.181818181818183 29686739.0 K562_100K_Clink_IgG_R1_2 62.51017074440334 45.0 142.86702803564918 151 27.27272727272727 29686739.0 K562_100K_Native_GATA2_R1 25.333887778262806 44.0 151.0 151 27.27272727272727 57641927.0 3.9858192455424843 92.73 0.76 0.265693 K562_100K_Native_GATA2_R1_1 24.37908720508868 43.0 146.27305032898067 151 9.090909090909092 57088003.0 K562_100K_Native_GATA2_R1_2 24.626956707919604 43.0 146.19155161199106 151 18.181818181818183 57088003.0 K562_100K_Native_H3K4Me3_R1 31.94183357356259 48.0 151.0 151 18.181818181818183 36221176.0 3.2811849661009176 95.43 0.51 0.299667 K562_100K_Native_H3K4Me3_R1_1 31.69572848544003 48.0 146.41598327413905 151 9.090909090909092 36074436.0 K562_100K_Native_H3K4Me3_R1_2 32.28673875727944 48.0 146.3097313842966 151 27.27272727272727 36074436.0 K562_100K_Native_IgG_R1 40.903358584349114 45.0 151.0 151 27.27272727272727 35530513.0 5.233915255874158 83.74 2.53 0.362676 0.002708478 0.0 32911644.0 100.0 100.0 0.0 32911644.0 32911644 32911644 100.0 K562_100K_Native_IgG_R1_1 39.86640443956346 44.0 143.48959469726972 151 9.090909090909092 35175238.0 K562_100K_Native_IgG_R1_2 40.17456463273032 44.0 143.39142037930205 151 18.181818181818183 35175238.0 K562_500K_Clink_GATA2_R1 20.429639500796597 44.0 151.0 151 18.181818181818183 49300588.0 4.785734828550171 93.55 0.42 0.229959 K562_500K_Clink_GATA2_R1_1 19.62383343768643 44.0 144.99564718702928 151 9.090909090909092 48851628.0 K562_500K_Clink_GATA2_R1_2 19.88371434823513 44.0 144.9311771963874 151 18.181818181818183 48851628.0 K562_500K_Clink_H3K4Me3_R1 49.195413287816635 54.0 151.0 151 27.27272727272727 49457305.0 3.9087842688069925 94.28 0.18 0.325375 K562_500K_Clink_H3K4Me3_R1_1 48.17478750629629 54.0 145.72449687719683 151 9.090909090909092 49208513.0 K562_500K_Clink_H3K4Me3_R1_2 48.71217109783188 54.0 145.6663268203207 151 18.181818181818183 49208513.0 K562_500K_Clink_IgG_R1 43.14473733502403 46.0 151.0 151 36.36363636363637 46099084.0 6.108701531533958 76.74 2.35 0.335501 0.002724499 0.0 41106456.0 100.0 100.0 0.0 41106456.0 41106456 41106456 100.0 K562_500K_Clink_IgG_R1_1 42.177541452615465 45.0 142.1740029990874 151 9.090909090909092 45592536.0 K562_500K_Clink_IgG_R1_2 42.3910439235381 45.0 142.10642215646877 151 36.36363636363637 45592536.0 K562_500K_Native_GATA2_R1 18.866035526625836 44.0 151.0 151 9.090909090909092 55081070.0 3.5019160565273806 96.63 0.11 0.226984 K562_500K_Native_GATA2_R1_1 18.299862963902015 43.0 146.72415601966077 151 9.090909090909092 54663803.0 K562_500K_Native_GATA2_R1_2 18.65101051951477 44.0 146.6500572051308 151 18.181818181818183 54663803.0 K562_500K_Native_H3K4Me3_R1 52.01308167150628 56.0 151.0 151 27.27272727272727 46496485.0 3.724513329248337 97.21 0.03 0.342669 K562_500K_Native_H3K4Me3_R1_1 51.46466970535736 57.0 145.67018994584572 151 18.181818181818183 46242338.0 K562_500K_Native_H3K4Me3_R1_2 52.021764893935334 57.0 145.6078720976435 151 27.27272727272727 46242338.0 K562_500K_Native_IgG_R1 43.39013662167615 47.0 151.0 151 36.36363636363637 36469408.0 7.483063122911271 75.29 1.87 0.306363 0.002703918 0.0 33210780.0 100.0 100.0 0.0 33210780.0 33210780 33210780 100.0 K562_500K_Native_IgG_R1_1 41.9113228253625 46.0 139.98619737157793 151 18.181818181818183 35882441.0 K562_500K_Native_IgG_R1_2 42.12546497910289 46.0 139.9321673517139 151 36.36363636363637 35882441.0 THP1_100K_Clink_H3K4Me3_R1 35.66187901316165 51.0 151.0 151 27.27272727272727 47647173.0 4.632125049185162 93.19 0.54 0.298647 THP1_100K_Clink_H3K4Me3_R1_1 34.723145768674 51.0 144.70449752349307 151 9.090909090909092 47383877.0 THP1_100K_Clink_H3K4Me3_R1_2 35.266742518987144 51.0 144.6418926842985 151 18.181818181818183 47383877.0 THP1_100K_Clink_IgG_R1 40.96215670983735 44.0 151.0 151 9.090909090909092 46158153.0 8.065905955813548 76.21 1.88 0.346652 0.002519101 0.0 40977804.0 100.0 100.0 0.0 40977804.0 40977804 40977804 100.0 THP1_100K_Clink_IgG_R1_1 40.30801886104345 43.0 139.73372363375032 151 9.090909090909092 45824018.0 THP1_100K_Clink_IgG_R1_2 40.76606671286316 43.0 139.68269801220836 151 18.181818181818183 45824018.0 THP1_100K_Clink_PU1_R1 24.4594331821515 45.0 151.0 151 9.090909090909092 37820538.0 5.747521508793425 89.13 1.43 0.278793 THP1_100K_Clink_PU1_R1_1 23.97784257542959 44.0 143.306112506691 151 9.090909090909092 37541145.0 THP1_100K_Clink_PU1_R1_2 24.342837173155857 44.0 143.24987469082257 151 18.181818181818183 37541145.0 THP1_100K_Native_H3K4Me3_R1 27.813473541580763 47.0 151.0 151 36.36363636363637 42277304.0 4.278362384515292 94.67 0.32 0.321781 THP1_100K_Native_H3K4Me3_R1_1 27.13381727274809 47.0 145.12881960525502 151 18.181818181818183 42065538.0 THP1_100K_Native_H3K4Me3_R1_2 27.485404948182833 47.0 145.01629245773583 151 27.27272727272727 42065538.0 THP1_100K_Native_IgG_R1 37.92952670929396 41.0 151.0 151 18.181818181818183 37978854.0 4.939288493441413 80.8 0.61 0.413771 0.002628476 0.0 32647616.0 100.0 100.0 0.0 32647616.0 32647616 32647616 100.0 THP1_100K_Native_IgG_R1_1 36.88346377567143 40.0 143.96953985620436 151 9.090909090909092 37832717.0 THP1_100K_Native_IgG_R1_2 37.60549478352152 40.0 143.83080535823 151 18.181818181818183 37832717.0 THP1_100K_Native_PU1_R1 24.091278379793962 45.0 151.0 151 18.181818181818183 45440017.0 5.23394913669034 90.64 1.14 0.288194 THP1_100K_Native_PU1_R1_1 22.733624173221827 44.0 143.4976545163235 151 9.090909090909092 45031650.0 THP1_100K_Native_PU1_R1_2 23.32153583279336 44.0 143.40068554005904 151 18.181818181818183 45031650.0 THP1_500K_Clink_H3K4Me3_R1 30.149667375689475 51.0 151.0 151 27.27272727272727 33206965.0 7.210173871376938 93.24 0.12 0.253994 THP1_500K_Clink_H3K4Me3_R1_1 29.7602288295937 51.0 140.67416669115127 151 18.181818181818183 33047981.0 THP1_500K_Clink_H3K4Me3_R1_2 30.169583913763915 51.0 140.62432736813787 151 27.27272727272727 33047981.0 THP1_500K_Clink_IgG_R1 29.39542801053983 44.0 151.0 151 9.090909090909092 50524640.0 11.534940441832601 78.33 0.38 0.252863 0.002489608 0.0 53367692.0 100.0 100.0 0.0 53367692.0 53367692 53367692 100.0 THP1_500K_Clink_IgG_R1_1 28.333672820885113 43.0 133.84583160030746 151 9.090909090909092 50177170.0 THP1_500K_Clink_IgG_R1_2 28.534268114368345 44.0 133.80366098765634 151 18.181818181818183 50177170.0 THP1_500K_Clink_PU1_R1 20.098721518132706 45.0 151.0 151 9.090909090909092 40797878.0 11.103943391726636 88.99 0.29 0.220436 THP1_500K_Clink_PU1_R1_1 19.225880929829813 43.0 134.45686455670347 151 9.090909090909092 40578243.0 THP1_500K_Clink_PU1_R1_2 19.68543124345824 43.0 134.4022436111884 151 18.181818181818183 40578243.0 THP1_500K_Native_H3K4Me3_R1 28.226079793193875 51.0 151.0 151 18.181818181818183 37789734.0 5.715999868364683 95.37 0.05 0.248253 THP1_500K_Native_H3K4Me3_R1_1 27.72108291481807 51.0 142.71299312765476 151 9.090909090909092 37488949.0 THP1_500K_Native_H3K4Me3_R1_2 28.19474883944558 51.0 142.63304121969384 151 18.181818181818183 37488949.0 THP1_500K_Native_IgG_R1 23.32336787914285 44.0 151.0 151 18.181818181818183 36748391.0 9.960111384187375 86.78 0.22 0.246312 0.002550064 0.0 43529452.0 100.0 100.0 0.0 43529452.0 43529452 43529452 100.0 THP1_500K_Native_IgG_R1_1 22.19752080969701 43.0 136.24276356106384 151 9.090909090909092 36497026.0 THP1_500K_Native_IgG_R1_2 22.498642393885305 44.0 136.16790655764663 151 18.181818181818183 36497026.0 THP1_500K_Native_PU1_R1 20.85409113414616 45.0 151.0 151 18.181818181818183 44961292.0 9.140326131763084 91.27 0.23 0.256306 THP1_500K_Native_PU1_R1_1 19.61717139449965 43.0 137.552723166511 151 9.090909090909092 44585173.0 THP1_500K_Native_PU1_R1_2 19.92958037365817 43.0 137.4660300409735 151 18.181818181818183 44585173.0 hCD34Neg_100K_Clink_GATA1_R1 27.795314369177788 41.0 151.0 151 9.090909090909092 26514843.0 6.171486115549075 93.02 1.03 0.388385 hCD34Neg_100K_Clink_GATA1_R1_1 27.38091316937789 41.0 142.5390612234511 151 9.090909090909092 26328310.0 hCD34Neg_100K_Clink_GATA1_R1_2 28.13472223499572 41.0 142.4099758776769 151 18.181818181818183 26328310.0 hCD34Neg_100K_Clink_H3K4Me3_R1 25.241517219416764 44.0 151.0 151 27.27272727272727 37021715.0 5.382937432711822 92.04 0.81 0.333166 hCD34Neg_100K_Clink_H3K4Me3_R1_1 24.241403921871537 43.0 143.33822233744823 151 18.181818181818183 36677681.0 hCD34Neg_100K_Clink_H3K4Me3_R1_2 24.54327461962177 43.0 143.21166635371523 151 27.27272727272727 36677681.0 hCD34Neg_100K_Clink_IgG_R1 27.672021086789698 41.0 151.0 151 9.090909090909092 27778084.0 5.584711295069836 89.26 1.35 0.389513 0.002747606 0.0 27729356.0 100.0 100.0 0.0 27729356.0 27729356 27729356 100.0 hCD34Neg_100K_Clink_IgG_R1_1 26.82499257480002 40.0 143.192074325037 151 9.090909090909092 27371019.0 hCD34Neg_100K_Clink_IgG_R1_2 27.44350952240326 41.0 143.01785150929163 151 18.181818181818183 27371019.0 hCD34Neg_25K_Clink_GATA1_R1 48.13616165781476 45.0 151.0 151 36.36363636363637 32287222.0 10.510931583304183 88.28 1.73 0.584394 hCD34Neg_25K_Clink_GATA1_R1_1 45.08878618491418 42.0 141.1320938041437 151 9.090909090909092 30862901.0 hCD34Neg_25K_Clink_GATA1_R1_2 45.533469900830916 42.0 141.00238768870108 151 18.181818181818183 30862901.0 hCD34Neg_25K_Clink_H3K4Me3_R1 50.227475405682185 47.0 151.0 151 45.45454545454545 30758178.0 14.433668266967711 77.92 2.48 0.562465 hCD34Neg_25K_Clink_H3K4Me3_R1_1 45.7197014463481 43.0 138.56779415266075 151 18.181818181818183 28635862.0 hCD34Neg_25K_Clink_H3K4Me3_R1_2 46.228783877792836 43.0 138.46366583970826 151 36.36363636363637 28635862.0 hCD34Neg_50K_Clink_GATA1_R1 36.68802434551105 43.0 151.0 151 27.27272727272727 33088525.0 7.8222383881897475 89.62 1.3 0.465364 hCD34Neg_50K_Clink_GATA1_R1_1 34.81731456192642 41.0 141.7663158269096 151 9.090909090909092 32448432.0 hCD34Neg_50K_Clink_GATA1_R1_2 35.261232156839895 42.0 141.61223799658487 151 18.181818181818183 32448432.0 hCD34Neg_50K_Clink_H3K4Me3_R1 33.044305407757264 45.0 151.0 151 36.36363636363637 32194572.0 5.429154783282611 88.12 1.42 0.421121 hCD34Neg_50K_Clink_H3K4Me3_R1_1 30.764798674553333 43.0 143.47639562492057 151 18.181818181818183 31438515.0 hCD34Neg_50K_Clink_H3K4Me3_R1_2 31.32706610861979 43.0 143.32433176312557 151 27.27272727272727 31438515.0 hCD34Plus_100K_Clink_GATA1_R1 27.53118346775598 44.0 151.0 151 18.181818181818183 26434276.0 8.333972646445197 91.26 1.05 0.307078 hCD34Plus_100K_Clink_GATA1_R1_1 26.369027058220354 43.0 138.75203790517762 151 9.090909090909092 26181542.0 hCD34Plus_100K_Clink_GATA1_R1_2 26.78367630249629 43.0 138.69055134338535 151 18.181818181818183 26181542.0 hCD34Plus_100K_Clink_H3K4Me3_R1 26.374210707595623 47.0 151.0 151 18.181818181818183 25739578.0 6.186765807100747 91.68 0.84 0.272665 hCD34Plus_100K_Clink_H3K4Me3_R1_1 25.948354024596526 47.0 142.74535057667134 151 18.181818181818183 25521122.0 hCD34Plus_100K_Clink_H3K4Me3_R1_2 26.637138476665882 47.0 142.6561053232691 151 27.27272727272727 25521122.0 hCD34Plus_100K_Clink_IgG_R1 26.970608194035833 44.0 151.0 151 27.27272727272727 28119034.0 8.822642182398184 87.19 1.38 0.305109 0.002596728 0.0 31043174.0 100.0 100.0 0.0 31043174.0 31043174 31043174 100.0 hCD34Plus_100K_Clink_IgG_R1_1 25.645809023505137 42.0 139.11396187506998 151 9.090909090909092 27802333.0 hCD34Plus_100K_Clink_IgG_R1_2 26.15688386871888 42.0 139.03004888114964 151 18.181818181818183 27802333.0 hCD34Plus_25K_Clink_GATA1_R1 46.80068457988057 44.0 151.0 151 9.090909090909092 21053665.0 7.572795646221531 86.51 2.19 0.546419 hCD34Plus_25K_Clink_GATA1_R1_1 44.04063377238819 42.0 140.3637475491691 151 9.090909090909092 20003420.0 hCD34Plus_25K_Clink_GATA1_R1_2 44.82735135630943 42.0 140.27265732559732 151 18.181818181818183 20003420.0 hCD34Plus_25K_Clink_H3K4Me3_R1 43.94999384336364 47.0 151.0 151 36.36363636363637 27263561.0 7.852930741196673 83.51 1.84 0.51663 hCD34Plus_25K_Clink_H3K4Me3_R1_1 40.11127332817105 44.0 139.84902580614636 151 18.181818181818183 25953972.0 hCD34Plus_25K_Clink_H3K4Me3_R1_2 40.99920798870805 44.0 139.75375576424295 151 27.27272727272727 25953972.0 hCD34Plus_50K_Clink_GATA1_R1 37.57118363244144 43.0 151.0 151 9.090909090909092 31108282.0 6.689487265525969 90.0 1.6 0.453266 hCD34Plus_50K_Clink_GATA1_R1_1 36.30901085814229 42.0 141.43387917098204 151 9.090909090909092 30400065.0 hCD34Plus_50K_Clink_GATA1_R1_2 36.97293062059248 42.0 141.3350487244024 151 18.181818181818183 30400065.0 hCD34Plus_50K_Clink_H3K4Me3_R1 36.155972198318175 47.0 151.0 151 36.36363636363637 30479014.0 6.4735692548000365 87.66 1.69 0.415108 hCD34Plus_50K_Clink_H3K4Me3_R1_1 33.99289988984468 45.0 141.77598866667822 151 18.181818181818183 29810148.0 hCD34Plus_50K_Clink_H3K4Me3_R1_2 34.662819357782425 45.0 141.68399308181898 151 27.27272727272727 29810148.0