Module	Section	Sample Name	Source
FastQC (raw)	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_100K_Clink_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_25K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Native_GATA2_R1_1_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Clink_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_100K_Clink_GATA1_R1_2_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_100K_Clink_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_25K_Clink_GATA1_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Clink_IgG_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_50K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Clink_PU1_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_25K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_100K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Native_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Native_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Native_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_25K_Clink_GATA1_R1_1_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Clink_IgG_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_100K_Clink_GATA1_R1_1_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Clink_GATA2_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_100K_Clink_IgG_R1_1_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Native_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Clink_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Native_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Native_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Native_PU1_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Clink_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Clink_IgG_R1_1_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_50K_Clink_H3K4Me3_R1_2_fastqc.zip
FastQC (raw)	all_sections	THP1_500K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_500K_Clink_PU1_R1_1_fastqc.zip
FastQC (raw)	all_sections	THP1_100K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/THP1_100K_Native_PU1_R1_2_fastqc.zip
FastQC (raw)	all_sections	hCD34Neg_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Neg_50K_Clink_GATA1_R1_2_fastqc.zip
FastQC (raw)	all_sections	hCD34Plus_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/hCD34Plus_50K_Clink_GATA1_R1_1_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Native_GATA2_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Clink_GATA2_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Native_H3K4Me3_R1_1_fastqc.zip
FastQC (raw)	all_sections	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_100K_Native_IgG_R1_2_fastqc.zip
FastQC (raw)	all_sections	K562_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/fastqc/K562_500K_Clink_H3K4Me3_R1_2_fastqc.zip
Cutadapt	all_sections	K562_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Native_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_25K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Native_GATA2_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Native_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Clink_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Native_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_100K_Clink_GATA1_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_25K_Clink_GATA1_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Clink_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_100K_Clink_GATA1_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Clink_PU1_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Clink_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_25K_Clink_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Native_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_100K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Native_PU1_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_25K_Clink_GATA1_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_50K_Clink_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Clink_IgG_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_50K_Clink_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_500K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Clink_GATA2_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_100K_Clink_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Clink_PU1_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Native_PU1_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Clink_GATA2_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Native_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_100K_Native_IgG_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_50K_Clink_GATA1_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_100K_Clink_IgG_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Neg_100K_Clink_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	THP1_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/THP1_500K_Native_H3K4Me3_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Clink_H3K4Me3_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_500K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_500K_Native_GATA2_R1_1.fastq.gz_trimming_report.txt
Cutadapt	all_sections	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/K562_100K_Native_IgG_R1_2.fastq.gz_trimming_report.txt
Cutadapt	all_sections	hCD34Plus_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/hCD34Plus_50K_Clink_GATA1_R1_2.fastq.gz_trimming_report.txt
FastQC (trimmed)	all_sections	hCD34Plus_25K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_25K_Clink_GATA1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_GATA2_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_GATA2_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_25K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_25K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_GATA1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_GATA2_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_GATA2_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_50K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_50K_Clink_GATA1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_50K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_50K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_50K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_GATA2_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_GATA2_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_50K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_50K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_25K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_GATA2_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_GATA2_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_GATA2_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_GATA2_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_PU1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_PU1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_PU1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_PU1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_50K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_50K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_PU1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_PU1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_50K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_PU1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_PU1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_50K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_50K_Clink_GATA1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Native_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Native_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_25K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_25K_Clink_GATA1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_PU1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_PU1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_PU1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_PU1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_25K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_PU1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_PU1_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_GATA2_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_GATA2_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_100K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_PU1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_PU1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Native_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Native_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_H3K4Me3_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_H3K4Me3_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_100K_Clink_GATA2_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_100K_Clink_GATA2_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Native_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Native_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_25K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_100K_Clink_IgG_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_100K_Clink_IgG_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	THP1_500K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/THP1_500K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_IgG_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_IgG_R1_2.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_25K_Clink_H3K4Me3_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	K562_500K_Native_GATA2_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/K562_500K_Native_GATA2_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Neg_25K_Clink_GATA1_R1_1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Neg_25K_Clink_GATA1_R1_1.trimmed_fastqc.zip
FastQC (trimmed)	all_sections	hCD34Plus_100K_Clink_GATA1_R1_2	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/trimgalore/fastqc/hCD34Plus_100K_Clink_GATA1_R1_2.trimmed_fastqc.zip
Bowtie2 (target)	all_sections	THP1_100K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Native_PU1_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Clink_PU1_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Native_GATA2_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Native_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_25K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_25K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_50K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_50K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_25K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_25K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Clink_GATA2_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Native_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_100K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_100K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Native_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Native_PU1_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_50K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Native_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_500K_Native_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_100K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Clink_PU1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Neg_100K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Native_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_100K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_100K_Clink_GATA1_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_50K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	THP1_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/THP1_100K_Native_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Clink_IgG_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Native_H3K4Me3_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_100K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_100K_Native_GATA2_R1.bowtie2.log
Bowtie2 (target)	all_sections	K562_500K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/K562_500K_Clink_GATA2_R1.bowtie2.log
Bowtie2 (target)	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2/hCD34Plus_100K_Clink_H3K4Me3_R1.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Clink_GATA2_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Native_PU1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Native_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_100K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Native_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Native_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_100K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Native_GATA2_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_25K_Clink_GATA1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Native_GATA2_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_50K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_100K_Clink_GATA1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Native_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Native_PU1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Clink_PU1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_25K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_50K_Clink_GATA1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Native_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Native_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Clink_PU1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_25K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_100K_Clink_GATA1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_100K_Native_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_100K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_100K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/THP1_500K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_500K_Clink_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Native_IgG_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	K562_100K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/K562_100K_Clink_GATA2_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_50K_Clink_GATA1_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Plus_50K_Clink_H3K4Me3_R1.spikein.bowtie2.log
Bowtie2 (spike-in)	all_sections	hCD34Neg_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/bowtie2_spikein/hCD34Neg_25K_Clink_GATA1_R1.spikein.bowtie2.log
Samtools alignment scores	stats	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/K562_500K_Clink_IgG_R1.stats
Samtools alignment scores	stats	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/THP1_500K_Clink_IgG_R1.stats
Samtools alignment scores	stats	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/hCD34Plus_100K_Clink_IgG_R1.stats
Samtools alignment scores	stats	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/THP1_100K_Clink_IgG_R1.stats
Samtools alignment scores	stats	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/K562_100K_Clink_IgG_R1.stats
Samtools alignment scores	stats	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/K562_500K_Native_IgG_R1.stats
Samtools alignment scores	stats	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/hCD34Neg_100K_Clink_IgG_R1.stats
Samtools alignment scores	stats	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/K562_100K_Native_IgG_R1.stats
Samtools alignment scores	stats	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/THP1_500K_Native_IgG_R1.stats
Samtools alignment scores	stats	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/stats/THP1_100K_Native_IgG_R1.stats
Samtools alignment scores	flagstat	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/hCD34Plus_100K_Clink_IgG_R1.flagstat
Samtools alignment scores	flagstat	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/THP1_500K_Clink_IgG_R1.flagstat
Samtools alignment scores	flagstat	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/THP1_100K_Native_IgG_R1.flagstat
Samtools alignment scores	flagstat	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/hCD34Neg_100K_Clink_IgG_R1.flagstat
Samtools alignment scores	flagstat	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/THP1_500K_Native_IgG_R1.flagstat
Samtools alignment scores	flagstat	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/K562_500K_Native_IgG_R1.flagstat
Samtools alignment scores	flagstat	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/K562_500K_Clink_IgG_R1.flagstat
Samtools alignment scores	flagstat	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/K562_100K_Clink_IgG_R1.flagstat
Samtools alignment scores	flagstat	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/K562_100K_Native_IgG_R1.flagstat
Samtools alignment scores	flagstat	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/flagstat/THP1_100K_Clink_IgG_R1.flagstat
Samtools alignment scores	idxstats	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/K562_500K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/THP1_500K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/hCD34Plus_100K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/THP1_100K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/K562_100K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/THP1_500K_Native_IgG_R1.idxstats
Samtools alignment scores	idxstats	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/THP1_100K_Native_IgG_R1.idxstats
Samtools alignment scores	idxstats	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/hCD34Neg_100K_Clink_IgG_R1.idxstats
Samtools alignment scores	idxstats	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/K562_100K_Native_IgG_R1.idxstats
Samtools alignment scores	idxstats	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/samtools/idxstats/K562_500K_Native_IgG_R1.idxstats
Library Complexity	all_sections	hCD34Neg_50K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_50K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Native_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Native_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Native_PU1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Native_PU1_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_25K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_25K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Native_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Native_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_100K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_100K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Native_GATA2_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Native_GATA2_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_100K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_100K_Clink_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Clink_GATA2_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Clink_GATA2_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_25K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_25K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Clink_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_25K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_25K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_100K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_100K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Native_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Native_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_50K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_50K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Native_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Native_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_50K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_50K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_100K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_100K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Native_GATA2_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Native_GATA2_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Native_PU1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Native_PU1_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Clink_PU1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Clink_PU1_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Clink_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Native_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Native_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_100K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_100K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Native_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Native_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_100K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_100K_Clink_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Native_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Native_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Clink_PU1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Clink_PU1_R1.lc_extrap.txt
Library Complexity	all_sections	K562_100K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_100K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Clink_GATA2_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Clink_GATA2_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Neg_25K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Neg_25K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_100K_Clink_H3K4Me3_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_100K_Clink_H3K4Me3_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Native_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Native_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	hCD34Plus_50K_Clink_GATA1_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/hCD34Plus_50K_Clink_GATA1_R1.lc_extrap.txt
Library Complexity	all_sections	K562_500K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/K562_500K_Clink_IgG_R1.lc_extrap.txt
Library Complexity	all_sections	THP1_500K_Clink_IgG_R1.lc_extrap	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/preseq/THP1_500K_Clink_IgG_R1.lc_extrap.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Clink_PU1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Native_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_100K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Native_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_25K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Clink_GATA2_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_50K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Native_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Native_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_100K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_25K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_25K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Native_PU1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_50K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_50K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Native_GATA2_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_100K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_50K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Clink_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Clink_GATA2_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_100K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_100K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_100K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_500K_Native_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_500K_Native_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Clink_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Clink_PU1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Native_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Neg_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Neg_25K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Native_GATA2_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Native_GATA2_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_500K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_500K_Native_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_25K_Clink_GATA1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_25K_Clink_GATA1_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_50K_Clink_H3K4Me3_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_50K_Clink_H3K4Me3_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	hCD34Plus_100K_Clink_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/hCD34Plus_100K_Clink_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	K562_100K_Native_IgG_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/K562_100K_Native_IgG_R1.target.markdup.MarkDuplicates.metrics.txt
Picard duplication stats	DuplicationMetrics	THP1_100K_Native_PU1_R1	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/picard/markduplicates/THP1_100K_Native_PU1_R1.target.markdup.MarkDuplicates.metrics.txt
Fragment QC	plotCorrelation	all_target_bams.plotCorrelation.mat.tab	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/all_target_bams.plotCorrelation.mat.tab
Fragment QC	plotPCA	all_target_bams.plotPCA.tab	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/all_target_bams.plotPCA.tab
Fragment QC	plotFingerprint	hCD34Neg_25K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_25K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Native_GATA2_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Native_GATA2_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_100K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_100K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_50K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_50K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_100K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_100K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_100K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_100K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_100K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_100K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Native_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Native_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_25K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_25K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_50K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_50K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Native_GATA2_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Native_GATA2_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Clink_PU1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Clink_PU1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Clink_GATA2_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Clink_GATA2_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Clink_PU1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Clink_PU1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Native_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Native_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Native_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Native_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Native_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Native_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_100K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_100K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Native_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Native_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Native_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Native_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Native_PU1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Native_PU1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Native_PU1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Native_PU1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_50K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_50K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Clink_GATA2_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Clink_GATA2_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Native_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Native_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_100K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_100K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_500K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_500K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_500K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_500K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_25K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_25K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	THP1_100K_Clink_IgG_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/THP1_100K_Clink_IgG_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Plus_50K_Clink_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Plus_50K_Clink_H3K4Me3_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	hCD34Neg_25K_Clink_GATA1_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/hCD34Neg_25K_Clink_GATA1_R1.plotFingerprint.raw.txt
Fragment QC	plotFingerprint	K562_100K_Native_H3K4Me3_R1.plotFingerprint.raw	/gpfs/data/aifantislab/home/zhouh05/genomics/rebecca/cut_run_202512/nfcore/work/a0/46ffb9abc82ec022edcb9a5efc7bc4/deeptools/K562_100K_Native_H3K4Me3_R1.plotFingerprint.raw.txt