### /gpfs/share/apps/star/2.6.0a/bin/STAR   --runMode genomeGenerate   --runThreadN 16   --genomeDir /gpfs/data/boekelab/rosette/4A6-genome-index   --genomeFastaFiles /gpfs/home/cm4322/FASTA/mm10_genome_reformed_H2d.fa      --outFileNamePrefix /gpfs/data/boekelab/rosette/4A6-genome-index/4A6   --sjdbGTFfile /gpfs/home/cm4322/FASTA/mm10_genes_reformed_H2d_v2.gtf   --sjdbOverhang 50
### GstrandBit 
versionGenome	20201
genomeFastaFiles	/gpfs/home/cm4322/FASTA/mm10_genome_reformed_H2d.fa 
genomeSAindexNbases	14
genomeChrBinNbits	18
genomeSAsparseD	1
sjdbOverhang	50
sjdbFileChrStartEnd	- 
sjdbGTFfile	/gpfs/home/cm4322/FASTA/mm10_genes_reformed_H2d_v2.gtf
sjdbGTFchrPrefix	-
sjdbGTFfeatureExon	exon
sjdbGTFtagExonParentTranscript	transcript_id
sjdbGTFtagExonParentGene	gene_id
sjdbInsertSave	Basic
genomeFileSizes	2754286454 22051586398