FastQCFastQC Report
Thu 24 Nov 2022
BS18843A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameBS18843A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11608248
Sequences flagged as poor quality0
Sequence length39
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTC706820.6088946411206928No Hit
GATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACAC668400.5757974846850273No Hit
ATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGC631230.5437771487997155No Hit
CAAGGTCGCTGTTCAATACATCGGATAGTTCGCGACACC490090.4221911868182003No Hit
CAAGGTCGCTGTTCAATACATCGGATCGACGCGTAAACG483530.41654003256994504No Hit
TGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCG362100.311933377026404No Hit
ATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATC351100.3024573561832931No Hit
TACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT342940.2954278716305854No Hit
AGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGA309640.266741372169168No Hit
AGGTCGCTGTTCAATACATCGGATAGTTCGCGACACCGT231330.19928071833062144No Hit
AGGTCGCTGTTCAATACATCGGATCGACGCGTAAACGGT223610.19263027461163823No Hit
CGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCA182910.15756899749212802No Hit
AGGGAAGCAGGCTACCCGGGCCTGATCTGGGGCACAAGT161650.13925443357171555No Hit
ACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGA155990.13437859011971487No Hit
ACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGA143000.12318827096044123No Hit
TATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTAT118680.10223765033276339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)