FastQCFastQC Report
Thu 24 Nov 2022
BS18844A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameBS18844A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11893946
Sequences flagged as poor quality0
Sequence length39
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAGACAGCTGCTGAACCAATGGGACCAAGCTTCACAC1555201.3075559616631856No Hit
ACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTC872040.7331797201702446No Hit
CAAGGTCGCTGTTCAATACATCGGATAGTTCGCGACACC794600.6680709665236415No Hit
CAAGGTCGCTGTTCAATACATCGGATCGACGCGTAAACG768260.6459252463396083No Hit
ATACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGC543960.45734191159098925No Hit
AGACAGCTGCTGAACCAATGGGACCAAGCTTCACACCGA458410.38541456300541466No Hit
AGGTCGCTGTTCAATACATCGGATAGTTCGCGACACCGT457970.3850446269051499No Hit
TGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCG457560.38469991372081225No Hit
AGGTCGCTGTTCAATACATCGGATCGACGCGTAAACGGT439180.3692466738961149No Hit
TACGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCT391150.3288647854967561No Hit
ATGTGTTCGACCCTATACGCGGCCGCCGAAACGCGTATC386180.32468618909149244No Hit
CGCGGCCGCCGAAACGCGTATCGCGCGCATAATAGCTCA226940.19080295135020792No Hit
ACATCGGATCGACGCGTAAACGGTACGTCGGCCTGGAGA167760.14104654586459364No Hit
ACATCGGATAGTTCGCGACACCGTTCGTCGGCCTGGAGA157810.13268094541542397No Hit
ATGGGACCAAGCTTCACACCGAGTTCATCGCTTATGTGT146010.12275993181741365No Hit
TGTTCGACCCTATACGCGGCCGCCGAAACGCGTATCGCG134580.11315000084917151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.7)