Index of /public/boekelab/tetO-Hox-RNAseq/20220514-SynHoxPaper-reanalysis

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]A5_211_WT-NA-0h_rep1.mb244.mm10_synHoxA.sorted.bam2022-05-15 00:05 1.3G 
[ ]A5_211_WT-NA-0h_rep1.mb244.mm10_synHoxA.sorted.bam.bai2022-05-15 00:05 2.3M 
[ ]A5_211_WT-NA-0h_rep1_mb244_mm10_synHoxA_forward.bw2022-05-15 00:08 29M 
[ ]A5_211_WT-NA-0h_rep1_mb244_mm10_synHoxA_reverse.bw2022-05-15 00:10 29M 
[ ]A5_211_WT-NA-0h_rep2.mb250.mm10_synHoxA.sorted.bam2022-05-15 00:14 921M 
[ ]A5_211_WT-NA-0h_rep2.mb250.mm10_synHoxA.sorted.bam.bai2022-05-15 00:14 2.2M 
[ ]A5_211_WT-NA-0h_rep2_mb250_mm10_synHoxA_forward.bw2022-05-15 00:16 23M 
[ ]A5_211_WT-NA-0h_rep2_mb250_mm10_synHoxA_reverse.bw2022-05-15 00:19 23M 
[ ]A5_211_WT-RA+SAG-24h_rep1.mb246.mm10_synHoxA.sorted.bam2022-05-15 00:22 1.0G 
[ ]A5_211_WT-RA+SAG-24h_rep1.mb246.mm10_synHoxA.sorted.bam.bai2022-05-15 00:22 2.1M 
[ ]A5_211_WT-RA+SAG-24h_rep1_mb246_mm10_synHoxA_forward.bw2022-05-15 00:25 27M 
[ ]A5_211_WT-RA+SAG-24h_rep1_mb246_mm10_synHoxA_reverse.bw2022-05-15 00:27 26M 
[ ]A5_211_WT-RA+SAG-24h_rep2.mb252.mm10_synHoxA.sorted.bam2022-05-15 00:31 937M 
[ ]A5_211_WT-RA+SAG-24h_rep2.mb252.mm10_synHoxA.sorted.bam.bai2022-05-15 00:31 2.2M 
[ ]A5_211_WT-RA+SAG-24h_rep2_mb252_mm10_synHoxA_forward.bw2022-05-15 00:33 29M 
[ ]A5_211_WT-RA+SAG-24h_rep2_mb252_mm10_synHoxA_reverse.bw2022-05-15 00:36 29M 
[ ]A5_211_WT-RA+SAG-48h_rep1.mb359.mm10_synHoxA.sorted.bam2022-05-15 00:40 1.1G 
[ ]A5_211_WT-RA+SAG-48h_rep1.mb359.mm10_synHoxA.sorted.bam.bai2022-05-15 00:40 2.4M 
[ ]A5_211_WT-RA+SAG-48h_rep1_mb359_mm10_synHoxA_forward.bw2022-05-15 00:42 31M 
[ ]A5_211_WT-RA+SAG-48h_rep1_mb359_mm10_synHoxA_reverse.bw2022-05-15 00:45 32M 
[ ]A5_211_WT-RA+SAG-48h_rep2.mb360.mm10_synHoxA.sorted.bam2022-05-15 00:49 1.1G 
[ ]A5_211_WT-RA+SAG-48h_rep2.mb360.mm10_synHoxA.sorted.bam.bai2022-05-15 00:49 2.3M 
[ ]A5_211_WT-RA+SAG-48h_rep2_mb360_mm10_synHoxA_forward.bw2022-05-15 00:52 31M 
[ ]A5_211_WT-RA+SAG-48h_rep2_mb360_mm10_synHoxA_reverse.bw2022-05-15 00:54 31M 
[ ]A5_211_WT-RA+SAG-96h_rep1.mb248.mm10_synHoxA.sorted.bam2022-05-15 00:57 865M 
[ ]A5_211_WT-RA+SAG-96h_rep1.mb248.mm10_synHoxA.sorted.bam.bai2022-05-15 00:58 2.1M 
[ ]A5_211_WT-RA+SAG-96h_rep1_mb248_mm10_synHoxA_forward.bw2022-05-15 01:00 27M 
[ ]A5_211_WT-RA+SAG-96h_rep1_mb248_mm10_synHoxA_reverse.bw2022-05-15 01:02 27M 
[ ]A5_211_WT-RA+SAG-96h_rep2.mb254.mm10_synHoxA.sorted.bam2022-05-15 01:06 1.1G 
[ ]A5_211_WT-RA+SAG-96h_rep2.mb254.mm10_synHoxA.sorted.bam.bai2022-05-15 01:07 2.2M 
[ ]A5_211_WT-RA+SAG-96h_rep2_mb254_mm10_synHoxA_forward.bw2022-05-15 01:09 31M 
[ ]A5_211_WT-RA+SAG-96h_rep2_mb254_mm10_synHoxA_reverse.bw2022-05-15 01:12 31M 
[ ]A8_242_WT-NA-0h_rep1.mb245.mm10_synHoxA.sorted.bam2022-05-15 01:16 1.1G 
[ ]A8_242_WT-NA-0h_rep1.mb245.mm10_synHoxA.sorted.bam.bai2022-05-15 01:16 2.2M 
[ ]A8_242_WT-NA-0h_rep1_mb245_mm10_synHoxA_forward.bw2022-05-15 01:18 27M 
[ ]A8_242_WT-NA-0h_rep1_mb245_mm10_synHoxA_reverse.bw2022-05-15 01:21 26M 
[ ]A8_242_WT-NA-0h_rep2.mb251.mm10_synHoxA.sorted.bam2022-05-15 01:25 1.0G 
[ ]A8_242_WT-NA-0h_rep2.mb251.mm10_synHoxA.sorted.bam.bai2022-05-15 01:25 2.2M 
[ ]A8_242_WT-NA-0h_rep2_mb251_mm10_synHoxA_forward.bw2022-05-15 01:27 26M 
[ ]A8_242_WT-NA-0h_rep2_mb251_mm10_synHoxA_reverse.bw2022-05-15 01:30 26M 
[ ]A8_242_WT-RA+SAG-24h_rep1.mb361.mm10_synHoxA.sorted.bam2022-05-15 01:34 1.2G 
[ ]A8_242_WT-RA+SAG-24h_rep1.mb361.mm10_synHoxA.sorted.bam.bai2022-05-15 01:34 2.4M 
[ ]A8_242_WT-RA+SAG-24h_rep1_mb361_mm10_synHoxA_forward.bw2022-05-15 01:37 33M 
[ ]A8_242_WT-RA+SAG-24h_rep1_mb361_mm10_synHoxA_reverse.bw2022-05-15 01:40 33M 
[ ]A8_242_WT-RA+SAG-24h_rep2.mb362.mm10_synHoxA.sorted.bam2022-05-15 01:44 1.1G 
[ ]A8_242_WT-RA+SAG-24h_rep2.mb362.mm10_synHoxA.sorted.bam.bai2022-05-15 01:44 2.4M 
[ ]A8_242_WT-RA+SAG-24h_rep2_mb362_mm10_synHoxA_forward.bw2022-05-15 01:46 33M 
[ ]A8_242_WT-RA+SAG-24h_rep2_mb362_mm10_synHoxA_reverse.bw2022-05-15 01:49 33M 
[ ]A8_242_WT-RA+SAG-48h_rep1.mb247.mm10_synHoxA.sorted.bam2022-05-15 01:53 1.0G 
[ ]A8_242_WT-RA+SAG-48h_rep1.mb247.mm10_synHoxA.sorted.bam.bai2022-05-15 01:53 2.2M 
[ ]A8_242_WT-RA+SAG-48h_rep1_mb247_mm10_synHoxA_forward.bw2022-05-15 01:55 30M 
[ ]A8_242_WT-RA+SAG-48h_rep1_mb247_mm10_synHoxA_reverse.bw2022-05-15 01:58 30M 
[ ]A8_242_WT-RA+SAG-48h_rep2.mb253.mm10_synHoxA.sorted.bam2022-05-15 02:01 877M 
[ ]A8_242_WT-RA+SAG-48h_rep2.mb253.mm10_synHoxA.sorted.bam.bai2022-05-15 02:01 2.0M 
[ ]A8_242_WT-RA+SAG-48h_rep2_mb253_mm10_synHoxA_forward.bw2022-05-15 02:04 23M 
[ ]A8_242_WT-RA+SAG-48h_rep2_mb253_mm10_synHoxA_reverse.bw2022-05-15 02:06 22M 
[ ]A8_242_WT-RA+SAG-96h_rep1.mb249.mm10_synHoxA.sorted.bam2022-05-15 02:10 1.0G 
[ ]A8_242_WT-RA+SAG-96h_rep1.mb249.mm10_synHoxA.sorted.bam.bai2022-05-15 02:10 2.2M 
[ ]A8_242_WT-RA+SAG-96h_rep1_mb249_mm10_synHoxA_forward.bw2022-05-15 02:12 30M 
[ ]A8_242_WT-RA+SAG-96h_rep1_mb249_mm10_synHoxA_reverse.bw2022-05-15 02:15 30M 
[ ]A8_242_WT-RA+SAG-96h_rep2.mb255.mm10_synHoxA.sorted.bam2022-05-15 02:19 1.1G 
[ ]A8_242_WT-RA+SAG-96h_rep2.mb255.mm10_synHoxA.sorted.bam.bai2022-05-15 02:19 2.2M 
[ ]A8_242_WT-RA+SAG-96h_rep2_mb255_mm10_synHoxA_forward.bw2022-05-15 02:22 31M 
[ ]A8_242_WT-RA+SAG-96h_rep2_mb255_mm10_synHoxA_reverse.bw2022-05-15 02:24 31M 
[ ]A10_394_WT-NA-0h_rep1.dpr291.mm10_synHoxA.sorted.bam2022-05-15 03:51 2.9G 
[ ]A10_394_WT-NA-0h_rep1.dpr291.mm10_synHoxA.sorted.bam.bai2022-05-15 03:52 3.0M 
[ ]A10_394_WT-NA-0h_rep1_dpr291_mm10_synHoxA_forward.bw2022-05-15 03:55 53M 
[ ]A10_394_WT-NA-0h_rep1_dpr291_mm10_synHoxA_reverse.bw2022-05-15 03:59 51M 
[ ]A10_394_WT-NA-0h_rep2.dpr299.mm10_synHoxA.sorted.bam2022-05-15 04:04 1.3G 
[ ]A10_394_WT-NA-0h_rep2.dpr299.mm10_synHoxA.sorted.bam.bai2022-05-15 04:05 2.5M 
[ ]A10_394_WT-NA-0h_rep2_dpr299_mm10_synHoxA_forward.bw2022-05-15 04:07 37M 
[ ]A10_394_WT-NA-0h_rep2_dpr299_mm10_synHoxA_reverse.bw2022-05-15 04:10 36M 
[ ]A10_394_WT-RA+SAG-24h_rep1.dpr292.mm10_synHoxA.sorted.bam2022-05-15 04:16 1.3G 
[ ]A10_394_WT-RA+SAG-24h_rep1.dpr292.mm10_synHoxA.sorted.bam.bai2022-05-15 04:16 2.5M 
[ ]A10_394_WT-RA+SAG-24h_rep1_dpr292_mm10_synHoxA_forward.bw2022-05-15 04:19 38M 
[ ]A10_394_WT-RA+SAG-24h_rep1_dpr292_mm10_synHoxA_reverse.bw2022-05-15 04:22 37M 
[ ]A10_394_WT-RA+SAG-24h_rep2.dpr300.mm10_synHoxA.sorted.bam2022-05-15 04:26 1.0G 
[ ]A10_394_WT-RA+SAG-24h_rep2.dpr300.mm10_synHoxA.sorted.bam.bai2022-05-15 04:26 2.3M 
[ ]A10_394_WT-RA+SAG-24h_rep2_dpr300_mm10_synHoxA_forward.bw2022-05-15 04:29 34M 
[ ]A10_394_WT-RA+SAG-24h_rep2_dpr300_mm10_synHoxA_reverse.bw2022-05-15 04:32 33M 
[ ]A10_394_WT-RA+SAG-48h_rep1.dpr293.mm10_synHoxA.sorted.bam2022-05-15 04:37 1.3G 
[ ]A10_394_WT-RA+SAG-48h_rep1.dpr293.mm10_synHoxA.sorted.bam.bai2022-05-15 04:38 2.4M 
[ ]A10_394_WT-RA+SAG-48h_rep1_dpr293_mm10_synHoxA_forward.bw2022-05-15 04:40 37M 
[ ]A10_394_WT-RA+SAG-48h_rep1_dpr293_mm10_synHoxA_reverse.bw2022-05-15 04:43 36M 
[ ]A10_394_WT-RA+SAG-48h_rep2.dpr301.mm10_synHoxA.sorted.bam2022-05-15 04:48 1.2G 
[ ]A10_394_WT-RA+SAG-48h_rep2.dpr301.mm10_synHoxA.sorted.bam.bai2022-05-15 04:49 2.3M 
[ ]A10_394_WT-RA+SAG-48h_rep2_dpr301_mm10_synHoxA_forward.bw2022-05-15 04:51 35M 
[ ]A10_394_WT-RA+SAG-48h_rep2_dpr301_mm10_synHoxA_reverse.bw2022-05-15 04:54 35M 
[ ]A10_394_WT-RA+SAG-96h_rep1.dpr294.mm10_synHoxA.sorted.bam2022-05-15 05:00 1.2G 
[ ]A10_394_WT-RA+SAG-96h_rep1.dpr294.mm10_synHoxA.sorted.bam.bai2022-05-15 05:00 2.3M 
[ ]A10_394_WT-RA+SAG-96h_rep1_dpr294_mm10_synHoxA_forward.bw2022-05-15 05:03 35M 
[ ]A10_394_WT-RA+SAG-96h_rep1_dpr294_mm10_synHoxA_reverse.bw2022-05-15 05:05 34M 
[ ]A10_394_WT-RA+SAG-96h_rep2.dpr302.mm10_synHoxA.sorted.bam2022-05-15 05:10 1.0G 
[ ]A10_394_WT-RA+SAG-96h_rep2.dpr302.mm10_synHoxA.sorted.bam.bai2022-05-15 05:10 2.2M 
[ ]A10_394_WT-RA+SAG-96h_rep2_dpr302_mm10_synHoxA_forward.bw2022-05-15 05:13 33M 
[ ]A10_394_WT-RA+SAG-96h_rep2_dpr302_mm10_synHoxA_reverse.bw2022-05-15 05:15 32M 
[ ]A17_Ctrl_WT-NA-0h_rep1.SRR7132955.mm10_synHoxA.sorted.bam2022-06-02 22:16 831M 
[ ]A17_Ctrl_WT-NA-0h_rep1.SRR7132955.mm10_synHoxA.sorted.bam.bai2022-06-02 22:16 2.0M 
[ ]A17_Ctrl_WT-NA-0h_rep1_SRR7132955_mm10_synHoxA_forward.bw2022-06-02 22:18 19M 
[ ]A17_Ctrl_WT-NA-0h_rep1_SRR7132955_mm10_synHoxA_reverse.bw2022-06-02 22:21 18M 
[ ]A17_Ctrl_WT-NA-0h_rep2.SRR7132956.mm10_synHoxA.sorted.bam2022-06-02 22:25 929M 
[ ]A17_Ctrl_WT-NA-0h_rep2.SRR7132956.mm10_synHoxA.sorted.bam.bai2022-06-02 22:25 2.3M 
[ ]A17_Ctrl_WT-NA-0h_rep2_SRR7132956_mm10_synHoxA_forward.bw2022-06-02 22:28 27M 
[ ]A17_Ctrl_WT-NA-0h_rep2_SRR7132956_mm10_synHoxA_reverse.bw2022-06-02 22:31 26M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep1.SRR10740599.mm10_synHoxA.sorted.bam2022-06-02 22:35 1.0G 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep1.SRR10740599.mm10_synHoxA.sorted.bam.bai2022-06-02 22:35 2.3M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep1_SRR10740599_mm10_synHoxA_forward.bw2022-06-02 22:38 31M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep1_SRR10740599_mm10_synHoxA_reverse.bw2022-06-02 22:41 31M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep2.SRR10740600.mm10_synHoxA.sorted.bam2022-06-02 22:45 1.1G 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep2.SRR10740600.mm10_synHoxA.sorted.bam.bai2022-06-02 22:45 2.3M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep2_SRR10740600_mm10_synHoxA_forward.bw2022-06-02 22:48 32M 
[ ]A17_Ctrl_WT-RA+SAG-48h_rep2_SRR10740600_mm10_synHoxA_reverse.bw2022-06-02 22:51 32M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep1.SRR10740602.mm10_synHoxA.sorted.bam2022-06-02 22:55 1.1G 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep1.SRR10740602.mm10_synHoxA.sorted.bam.bai2022-06-02 22:56 2.2M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep1_SRR10740602_mm10_synHoxA_forward.bw2022-06-02 22:58 31M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep1_SRR10740602_mm10_synHoxA_reverse.bw2022-06-02 23:01 31M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep2.SRR10740603.mm10_synHoxA.sorted.bam2022-06-02 23:05 895M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep2.SRR10740603.mm10_synHoxA.sorted.bam.bai2022-06-02 23:05 2.0M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep2_SRR10740603_mm10_synHoxA_forward.bw2022-06-02 23:07 27M 
[ ]A17_Ctrl_WT-RA+SAG-96h_rep2_SRR10740603_mm10_synHoxA_reverse.bw2022-06-02 23:10 27M 
[ ]C4_328_WT-NA-0h_rep1.mb305.mm10_synHoxA.sorted.bam2022-05-15 02:29 1.0G 
[ ]C4_328_WT-NA-0h_rep1.mb305.mm10_synHoxA.sorted.bam.bai2022-05-15 02:29 2.5M 
[ ]C4_328_WT-NA-0h_rep1_mb305_mm10_synHoxA_forward.bw2022-05-15 02:32 28M 
[ ]C4_328_WT-NA-0h_rep1_mb305_mm10_synHoxA_reverse.bw2022-05-15 02:34 27M 
[ ]C4_328_WT-NA-0h_rep2.mb306.mm10_synHoxA.sorted.bam2022-05-15 02:37 794M 
[ ]C4_328_WT-NA-0h_rep2.mb306.mm10_synHoxA.sorted.bam.bai2022-05-15 02:38 2.4M 
[ ]C4_328_WT-NA-0h_rep2_mb306_mm10_synHoxA_forward.bw2022-05-15 02:40 25M 
[ ]C4_328_WT-NA-0h_rep2_mb306_mm10_synHoxA_reverse.bw2022-05-15 02:42 24M 
[ ]C4_328_WT-RA+SAG-24h_rep1.mb309.mm10_synHoxA.sorted.bam2022-05-15 02:46 847M 
[ ]C4_328_WT-RA+SAG-24h_rep1.mb309.mm10_synHoxA.sorted.bam.bai2022-05-15 02:46 3.1M 
[ ]C4_328_WT-RA+SAG-24h_rep1_mb309_mm10_synHoxA_forward.bw2022-05-15 02:49 29M 
[ ]C4_328_WT-RA+SAG-24h_rep1_mb309_mm10_synHoxA_reverse.bw2022-05-15 02:51 28M 
[ ]C4_328_WT-RA+SAG-24h_rep2.mb310.mm10_synHoxA.sorted.bam2022-05-15 02:55 1.0G 
[ ]C4_328_WT-RA+SAG-24h_rep2.mb310.mm10_synHoxA.sorted.bam.bai2022-05-15 02:56 2.9M 
[ ]C4_328_WT-RA+SAG-24h_rep2_mb310_mm10_synHoxA_forward.bw2022-05-15 02:58 32M 
[ ]C4_328_WT-RA+SAG-24h_rep2_mb310_mm10_synHoxA_reverse.bw2022-05-15 03:01 31M 
[ ]C4_328_WT-RA+SAG-48h_rep1.mb313.mm10_synHoxA.sorted.bam2022-05-15 03:05 932M 
[ ]C4_328_WT-RA+SAG-48h_rep1.mb313.mm10_synHoxA.sorted.bam.bai2022-05-15 03:05 2.4M 
[ ]C4_328_WT-RA+SAG-48h_rep1_mb313_mm10_synHoxA_forward.bw2022-05-15 03:08 29M 
[ ]C4_328_WT-RA+SAG-48h_rep1_mb313_mm10_synHoxA_reverse.bw2022-05-15 03:10 29M 
[ ]C4_328_WT-RA+SAG-48h_rep2.mb314.mm10_synHoxA.sorted.bam2022-05-15 03:13 784M 
[ ]C4_328_WT-RA+SAG-48h_rep2.mb314.mm10_synHoxA.sorted.bam.bai2022-05-15 03:14 2.3M 
[ ]C4_328_WT-RA+SAG-48h_rep2_mb314_mm10_synHoxA_forward.bw2022-05-15 03:16 27M 
[ ]C4_328_WT-RA+SAG-48h_rep2_mb314_mm10_synHoxA_reverse.bw2022-05-15 03:18 27M 
[ ]C4_328_WT-RA+SAG-96h_rep1.mb317.mm10_synHoxA.sorted.bam2022-05-15 03:23 1.0G 
[ ]C4_328_WT-RA+SAG-96h_rep1.mb317.mm10_synHoxA.sorted.bam.bai2022-05-15 03:23 2.4M 
[ ]C4_328_WT-RA+SAG-96h_rep1_mb317_mm10_synHoxA_forward.bw2022-05-15 03:26 31M 
[ ]C4_328_WT-RA+SAG-96h_rep1_mb317_mm10_synHoxA_reverse.bw2022-05-15 03:28 31M 
[ ]C4_328_WT-RA+SAG-96h_rep2.mb318.mm10_synHoxA.sorted.bam2022-05-15 03:32 918M 
[ ]C4_328_WT-RA+SAG-96h_rep2.mb318.mm10_synHoxA.sorted.bam.bai2022-05-15 03:32 2.4M 
[ ]C4_328_WT-RA+SAG-96h_rep2_mb318_mm10_synHoxA_forward.bw2022-05-15 03:35 29M 
[ ]C4_328_WT-RA+SAG-96h_rep2_mb318_mm10_synHoxA_reverse.bw2022-05-15 03:37 29M 
[TXT]Ctrl_SynHox_libs.txt2022-06-02 22:02 230  
[TXT]FeatureCounts_SynHoxA_paper.txt2022-06-03 00:06 26M 
[TXT]FeatureCounts_SynHoxA_paper.txt.summary2022-06-03 00:06 6.8K 
[TXT]FeatureCounts_SynHoxA_paper_withGFP.txt2022-10-05 21:17 26M 
[TXT]FeatureCounts_SynHoxA_paper_withGFP.txt.summary2022-10-05 21:17 6.8K 
[TXT]SynHox-libs.txt2022-05-14 23:57 1.0K 
[ ]feature.counts.sh2022-10-05 21:15 650  
[ ]hisat2.sh2022-05-14 23:58 1.7K 
[ ]hisat2_ctrl.sh2022-06-02 22:11 1.8K 
[ ]slurm-17195373.out2022-05-15 05:15 57K 
[ ]slurm-17373429_ctrl.out2022-06-02 23:10 11K 
[ ]slurm-17374435.out2022-06-03 00:06 30K 
[ ]slurm-19020798.out2022-10-05 21:17 30K