Index of /public/yanailab/jingye_share/20231129/A1

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]A1_sc.counts.matrix2023-12-07 19:19 174M 
[ ]A1_sc.meta.matrix2023-12-07 19:28 66K 
[ ]A1_sc_counts.matrix2023-12-07 20:03 174M 
[ ]A1_sc_meta.matrix2023-12-07 20:03 66K 
[ ]01_incoming_data.infercnv_obj2023-12-07 20:03 36M 
[ ]02_reduced_by_cutoff.infercnv_obj2023-12-07 20:03 34M 
[ ]03_normalized_by_depthHMMi6.infercnv_obj2023-12-07 20:06 36M 
[ ]04_logtransformedHMMi6.infercnv_obj2023-12-07 20:07 30M 
[ ]05_scaledHMMi6.infercnv_obj2023-12-07 20:07 201M 
[ ]08_remove_ref_avg_from_obs_logFCHMMi6.infercnv_obj2023-12-07 20:08 201M 
[ ]09_apply_max_centered_expr_thresholdHMMi6.infercnv_obj2023-12-07 20:08 199M 
[ ]10_smoothed_by_chrHMMi6.infercnv_obj2023-12-07 20:10 201M 
[ ]11_recentered_cells_by_chrHMMi6.infercnv_obj2023-12-07 20:10 201M 
[ ]12_remove_ref_avg_from_obs_adjustHMMi6.infercnv_obj2023-12-07 20:11 201M 
[ ]14_invert_log_transformHMMi6.infercnv_obj2023-12-07 20:11 194M 
[ ]15_tumor_subclustersHMMi6.qnorm.infercnv_obj2023-12-07 20:27 194M 
[ ]preliminary.infercnv_obj2023-12-07 20:27 194M 
[ ]expr.infercnv.preliminary.dat2023-12-07 20:28 389M 
[TXT]infercnv.preliminary.observations_dendrogram.txt2023-12-07 20:28 134K 
[TXT]infercnv.preliminary.observation_groupings.txt2023-12-07 20:28 143K 
[TXT]infercnv.preliminary.heatmap_thresholds.txt2023-12-07 20:29 277  
[TXT]infercnv.preliminary.observations.txt2023-12-07 20:29 389M 
[IMG]infercnv.preliminary.png2023-12-07 20:29 1.3M 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.cell_groupings2023-12-07 21:04 166K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.pred_cnv_regions.dat2023-12-07 21:04 16K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.pred_cnv_genes.dat2023-12-07 21:04 951K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.genes_used.dat2023-12-07 21:04 247K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.infercnv_obj2023-12-07 21:04 30M 
[ ]expr.infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.dat2023-12-07 21:04 45M 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observations_dendrogram.txt2023-12-07 21:04 134K 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observation_groupings.txt2023-12-07 21:05 143K 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.heatmap_thresholds.txt2023-12-07 21:05 56  
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observations.txt2023-12-07 21:06 45M 
[IMG]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.png2023-12-07 21:06 154K 
[ ]18_HMM_pred.Bayes_NetHMMi6.qnorm.hmm_mode-subclusters.mcmc_obj2023-12-07 21:10 245M 
[DIR]BayesNetOutput.HMMi6.qnorm.hmm_mode-subclusters/2023-12-07 21:14 -  
[ ]19_HMM_pred.Bayes_NetHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.infercnv_obj2023-12-07 21:15 30M 
[ ]expr.infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.dat2023-12-07 21:16 45M 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observations_dendrogram.txt2023-12-07 21:16 134K 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observation_groupings.txt2023-12-07 21:16 143K 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.heatmap_thresholds.txt2023-12-07 21:16 56  
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observations.txt2023-12-07 21:17 45M 
[IMG]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.png2023-12-07 21:17 158K 
[ ]HMM_CNV_predictions.HMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_genes.dat2023-12-07 21:17 951K 
[ ]HMM_CNV_predictions.HMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_regions.dat2023-12-07 21:17 16K 
[ ]20_HMM_pred.repr_intensitiesHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.infercnv_obj2023-12-07 21:17 30M 
[ ]expr.infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.dat2023-12-07 21:18 45M 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observations_dendrogram.txt2023-12-07 21:18 134K 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observation_groupings.txt2023-12-07 21:18 143K 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.heatmap_thresholds.txt2023-12-07 21:18 200  
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observations.txt2023-12-07 21:19 45M 
[IMG]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.png2023-12-07 21:19 155K 
[ ]22_denoiseHMMi6.qnorm.NF_NA.SD_1.5.NL_FALSE.infercnv_obj2023-12-07 21:19 52M 
[ ]run.final.infercnv_obj2023-12-07 21:19 52M 
[ ]expr.infercnv.dat2023-12-07 21:20 381M 
[TXT]infercnv.observations_dendrogram.txt2023-12-07 21:20 134K 
[TXT]General_HCL_1_members.txt2023-12-07 21:21 381M 
[TXT]infercnv.observation_groupings.txt2023-12-07 21:21 143K 
[TXT]infercnv.heatmap_thresholds.txt2023-12-07 21:21 278  
[TXT]infercnv.observations.txt2023-12-07 21:21 381M 
[IMG]infercnv.png2023-12-07 21:21 570K 
[TXT]A1-sequence_1488-roi#4-IMSML-coords.csv2023-12-21 18:58 12M 
[TXT]A1-IMSML-coords.csv2023-12-21 18:58 12M