Index of /public/yanailab/jingye_share/20231129/C1

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]01_incoming_data.infercnv_obj2023-12-07 23:16 40M 
[ ]02_reduced_by_cutoff.infercnv_obj2023-12-07 23:17 36M 
[ ]03_normalized_by_depthHMMi6.infercnv_obj2023-12-07 23:19 38M 
[ ]04_logtransformedHMMi6.infercnv_obj2023-12-07 23:20 32M 
[ ]05_scaledHMMi6.infercnv_obj2023-12-07 23:20 236M 
[ ]08_remove_ref_avg_from_obs_logFCHMMi6.infercnv_obj2023-12-07 23:21 235M 
[ ]09_apply_max_centered_expr_thresholdHMMi6.infercnv_obj2023-12-07 23:21 233M 
[ ]10_smoothed_by_chrHMMi6.infercnv_obj2023-12-07 23:23 235M 
[ ]11_recentered_cells_by_chrHMMi6.infercnv_obj2023-12-07 23:24 235M 
[ ]12_remove_ref_avg_from_obs_adjustHMMi6.infercnv_obj2023-12-07 23:24 236M 
[ ]14_invert_log_transformHMMi6.infercnv_obj2023-12-07 23:25 227M 
[ ]15_tumor_subclustersHMMi6.qnorm.infercnv_obj2023-12-07 23:38 227M 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.cell_groupings2023-12-08 00:22 213K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.genes_used.dat2023-12-08 00:22 231K 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.infercnv_obj2023-12-08 00:22 30M 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.pred_cnv_genes.dat2023-12-08 00:22 2.2M 
[ ]17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.pred_cnv_regions.dat2023-12-08 00:22 38K 
[ ]18_HMM_pred.Bayes_NetHMMi6.qnorm.hmm_mode-subclusters.mcmc_obj2023-12-08 00:32 349M 
[ ]19_HMM_pred.Bayes_NetHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.infercnv_obj2023-12-08 00:40 30M 
[ ]20_HMM_pred.repr_intensitiesHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.infercnv_obj2023-12-08 00:42 30M 
[ ]22_denoiseHMMi6.qnorm.NF_NA.SD_1.5.NL_FALSE.infercnv_obj2023-12-08 00:44 56M 
[DIR]BayesNetOutput.HMMi6.qnorm.hmm_mode-subclusters/2023-12-08 00:39 -  
[TXT]C1-IMSML-coords.csv2023-12-21 18:58 13M 
[TXT]C1-sequence_1488-roi#1-IMSML-coords.csv2023-12-21 18:58 13M 
[ ]C1_sc_counts.matrix2023-12-07 23:16 223M 
[ ]C1_sc_meta.matrix2023-12-07 23:16 85K 
[TXT]General_HCL_1_members.txt2023-12-08 00:46 458M 
[ ]HMM_CNV_predictions.HMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_genes.dat2023-12-08 00:42 2.2M 
[ ]HMM_CNV_predictions.HMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.pred_cnv_regions.dat2023-12-08 00:42 38K 
[ ]expr.infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.dat2023-12-08 00:23 54M 
[ ]expr.infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.dat2023-12-08 00:41 54M 
[ ]expr.infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.dat2023-12-08 00:43 54M 
[ ]expr.infercnv.dat2023-12-08 00:45 458M 
[ ]expr.infercnv.preliminary.dat2023-12-07 23:39 468M 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.heatmap_thresholds.txt2023-12-08 00:23 56  
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observation_groupings.txt2023-12-08 00:23 183K 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observations.txt2023-12-08 00:24 54M 
[TXT]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.observations_dendrogram.txt2023-12-08 00:23 172K 
[IMG]infercnv.17_HMM_predHMMi6.qnorm.hmm_mode-subclusters.png2023-12-08 00:24 158K 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.heatmap_thresholds.txt2023-12-08 00:41 56  
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observation_groupings.txt2023-12-08 00:41 183K 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observations.txt2023-12-08 00:42 54M 
[TXT]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.observations_dendrogram.txt2023-12-08 00:41 172K 
[IMG]infercnv.19_HMM_pred.Bayes_Net.Pnorm_0.5.png2023-12-08 00:42 162K 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.heatmap_thresholds.txt2023-12-08 00:43 200  
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observation_groupings.txt2023-12-08 00:43 183K 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observations.txt2023-12-08 00:44 54M 
[TXT]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.observations_dendrogram.txt2023-12-08 00:43 172K 
[IMG]infercnv.20_HMM_predHMMi6.qnorm.hmm_mode-subclusters.Pnorm_0.5.repr_intensities.png2023-12-08 00:44 159K 
[TXT]infercnv.heatmap_thresholds.txt2023-12-08 00:46 278  
[TXT]infercnv.observation_groupings.txt2023-12-08 00:46 183K 
[TXT]infercnv.observations.txt2023-12-08 00:47 458M 
[TXT]infercnv.observations_dendrogram.txt2023-12-08 00:45 172K 
[IMG]infercnv.png2023-12-08 00:47 564K 
[TXT]infercnv.preliminary.heatmap_thresholds.txt2023-12-07 23:40 278  
[TXT]infercnv.preliminary.observation_groupings.txt2023-12-07 23:40 183K 
[TXT]infercnv.preliminary.observations.txt2023-12-07 23:41 468M 
[TXT]infercnv.preliminary.observations_dendrogram.txt2023-12-07 23:39 172K 
[IMG]infercnv.preliminary.png2023-12-07 23:41 1.2M 
[ ]preliminary.infercnv_obj2023-12-07 23:38 227M 
[ ]run.final.infercnv_obj2023-12-08 00:45 56M