2023-04-17 16:30:13 [time] __start__
2023-04-17 16:30:13 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:30:18 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               56486  270339      10     8         0      40         0       7 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
                               56501     157      24     1         0    1008         0     370   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
2023-04-17 16:30:18 [monitor] Stage exceeded its address space quota (using 264.2, allowed 4G)
2023-04-17 16:30:23 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               56486  270339      10     8         0      79         0       9 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
                               56501  308472      54     9         0    2404         0     651   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
2023-04-17 16:30:23 [monitor] Stage exceeded its address space quota (using 565.2, allowed 4G)
2023-04-17 16:30:28 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               56486  270339      10     8         0     126         0      11 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
                               56501  308508      77     9         0    3412         0    1129   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-udc993dac55/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.udc993dac55 
2023-04-17 16:30:28 [monitor] Stage exceeded its address space quota (using 565.3, allowed 4G)
2023-04-17 16:30:31 [time] __end__
