2023-04-17 16:47:50 [time] __start__
2023-04-17 16:47:50 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:47:55 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               60117  231837      12     7         0      66         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/analyzer/preprocess_matrix join /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udc993db075 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udc993db075/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.SPATIAL_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.udc993db075 
                               60124  310018     272    28         0    4726         0     391   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/analyzer/preprocess_matrix join /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udc993db075 /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udc993db075/files /gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.SPATIAL_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.udc993db075 
2023-04-17 16:47:55 [monitor] Stage exceeded its address space quota (using 529.2, allowed 6G)
2023-04-17 16:47:56 [time] __end__
