@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_KMEANS(
    matrix_h5    = "/gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-udc993db075/files/preprocessed_matrix_h5.h5",
    pca_h5       = "/gpfs/data/yanailab/projects/jw7078/processed_data/359-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-udc993db085/files/pca_h5.h5",
    skip         = false,
    random_seed  = null,
    max_clusters = null,
    num_bcs      = null,
    num_pcs      = null,
)
