2023-04-17 16:37:06 [time] __start__
2023-04-17 16:37:06 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:37:11 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               58772  231772      10     7         0      47         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ue5873dadf2 
                               58789  308459      48     9         0    1306         0      57   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ue5873dadf2 
2023-04-17 16:37:11 [monitor] Stage exceeded its address space quota (using 527.6, allowed 4G)
2023-04-17 16:37:16 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               58772  231773      10     7         0      99         0       8 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ue5873dadf2 
                               58789  308511      86     9         0    4528         0      77   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ue5873dadf2/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ue5873dadf2 
                               58901     387      31     1         0     610         0       1     python -c import h5py; print(h5py.__version__) 
2023-04-17 16:37:16 [monitor] Stage exceeded its address space quota (using 528.0, allowed 4G)
2023-04-17 16:37:17 [time] __end__
