2023-04-17 16:56:29 [time] __start__
2023-04-17 16:56:29 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:56:34 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               64097  347345      12    10         0      53         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/analyzer/run_graph_clustering join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ue5873db279 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ue5873db279/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.SPATIAL_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.ue5873db279 
                               64107  308553     108     9         0    4011         0  142127   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/analyzer/run_graph_clustering join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ue5873db279 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ue5873db279/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.SPATIAL_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.ue5873db279 
                               64165      23      14     1         0  138164         0       0     convert -i - -o /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ue5873db279/files/matrix.bin 
2023-04-17 16:56:34 [monitor] Stage exceeded its address space quota (using 640.5, allowed 6G)
2023-04-17 16:56:34 [time] __end__
