2023-04-17 16:54:14 [time] __start__
2023-04-17 16:54:14 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:54:19 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0      44         0       7 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154173      29     5         0   96851         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:19 [monitor] Stage exceeded its address space quota (using 414.6, allowed 5G)
2023-04-17 16:54:24 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0      83         0       9 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154320      73     5         0   97562         0       4   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:24 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:29 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     122         0      11 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154320      75     5         0  103004         0      14   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:29 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:34 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     161         0      13 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154320      75     5         0  109094         0      26   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:34 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:39 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     200         0      15 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      78     5         0  115520         0      37   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:39 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:44 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     239         0      17 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  121628         0      48   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:44 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:49 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     278         0      19 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  128383         0      60   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:49 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:54 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     317         0      21 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  134970         0      73   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:54 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:54:59 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     356         0      23 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  141300         0      84   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:54:59 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:04 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     395         0      25 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  147754         0      96   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:04 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:09 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     434         0      27 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      79     5         0  154350         0     108   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:09 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:14 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     474         0      30 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      80     5         0  160590         0     120   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:14 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:19 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     513         0      32 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      81     5         0  166355         0     130   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:19 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:24 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     552         0      34 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      84     5         0  172751         0     142   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:24 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:29 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63041  270341      12     8         0     591         0      36 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
                               63067  154319      84     5         0  179672         0     155   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk0-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk0.ue5873db1f6 
2023-04-17 16:55:29 [monitor] Stage exceeded its address space quota (using 414.7, allowed 5G)
2023-04-17 16:55:31 [time] __end__
