2023-04-17 16:54:14 [time] __start__
2023-04-17 16:54:14 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:54:19 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270404      14     8         0      44         0       7 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154076      23     5         0   98498         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:19 [monitor] Stage exceeded its address space quota (using 414.5, allowed 5G)
2023-04-17 16:54:24 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270404      14     8         0      83         0       9 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154107      48     5         0  102083         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:24 [monitor] Stage exceeded its address space quota (using 414.6, allowed 5G)
2023-04-17 16:54:29 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270404      14     8         0     122         0      11 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154320      73     5         0  106989         0       7   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:29 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:34 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270404      14     8         0     161         0      13 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154320      75     5         0  113555         0      19   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:34 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:39 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270404      14     8         0     200         0      15 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      76     5         0  119549         0      30   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:39 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:44 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     240         0      18 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  126083         0      42   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:44 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:49 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     279         0      20 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  132136         0      53   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:49 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:54 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     318         0      22 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  137918         0      64   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:54 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:54:59 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     357         0      24 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  144337         0      75   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:54:59 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:04 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     396         0      26 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  150925         0      87   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:04 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:09 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     436         0      29 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  157398         0      99   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:09 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:14 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     475         0      31 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  164500         0     113   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:14 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:19 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     515         0      34 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  171617         0     126   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:19 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:24 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      14     8         0     554         0      36 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      78     5         0  178588         0     138   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:24 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:29 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      16     8         0     593         0      38 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      79     5         0  184850         0     150   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:29 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:34 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63054  270405      16     8         0     632         0      40 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
                               63074  154319      83     5         0  191187         0     161   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/chnk3-ue5873db1f6/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.chnk3.ue5873db1f6 
2023-04-17 16:55:34 [monitor] Stage exceeded its address space quota (using 414.8, allowed 5G)
2023-04-17 16:55:35 [time] __end__
