2023-04-17 16:55:49 [time] __start__
2023-04-17 16:55:49 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:55:54 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63414  231773      10     7         0      50         0       7 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.ue5873db1f5 
                               63421      36       5     1         0   58771         0     472   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.ue5873db1f5 
                               63428  154287       5     5         0   21474         0       0     samtools index -@ 3 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files/pos_sorted_single_sample.bam /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files/pos_sorted_single_sample.bam.bai 
2023-04-17 16:55:54 [monitor] Stage exceeded its address space quota (using 377.0, allowed 7G)
2023-04-17 16:55:59 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63414  231773      10     7         0     102         0       9 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.ue5873db1f5 
                               63421      36       5     1         0   58771         0     472   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_pos_bam join /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER.WRITE_POS_BAM.fork0.ue5873db1f5 
                               63428  154293      11     5         0   72263         0       0     samtools index -@ 3 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files/pos_sorted_single_sample.bam /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/WRITE_POS_BAM/fork0/join-ue5873db1f5/files/pos_sorted_single_sample.bam.bai 
2023-04-17 16:55:59 [monitor] Stage exceeded its address space quota (using 377.1, allowed 7G)
2023-04-17 16:56:03 [time] __end__
