2023-04-17 16:56:05 [time] __start__
2023-04-17 16:56:05 [monitor] cgroup memory limit of 137438953472 bytes detected
2023-04-17 16:56:10 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63500  231838      14     7         0      40         0       7 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
                               63507      55      22     1         0  913164         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
2023-04-17 16:56:10 [monitor] Stage exceeded its address space quota (using 226.5, allowed 11G)
2023-04-17 16:56:15 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63500  231838      14     7         0      70         0       9 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
                               63507     103      72     1         0 1267559         0    1637   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
2023-04-17 16:56:15 [monitor] Stage exceeded its address space quota (using 226.5, allowed 11G)
2023-04-17 16:56:20 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                               63500  231838      14     7         0     100         0      11 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
                               63507     103      72     1         0 1270575         0    2801   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_molecule_info main /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265 /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/WRITE_MOLECULE_INFO/fork0/chnk0-ue5873db265/files /gpfs/data/yanailab/projects/jw7078/processed_data/399-A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.WRITE_MOLECULE_INFO.fork0.chnk0.ue5873db265 
2023-04-17 16:56:20 [monitor] Stage exceeded its address space quota (using 226.5, allowed 11G)
2023-04-17 16:56:24 [time] __end__
