2023-05-19 18:14:43 [time] __start__
2023-05-19 18:14:43 [monitor] cgroup memory limit of 107374182400 bytes detected
2023-05-19 18:14:43 [info] Running cloupetiler: cloupetiler /gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/tmp/tmp61F2qm tiles_0_0 --tilesize 512 --page 0
2023-05-19 18:14:48 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196458  231836      10     7         0      48         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196464     339      30     1         0     860         0      43   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196471  117068     759     4         0      11         0    3231     cloupetiler /gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/tmp/tmp61F2qm tiles_0_0 --tilesize 512 --page 0 
2023-05-19 18:14:48 [monitor] Stage exceeded its address space quota (using 341.1, allowed 8G)
2023-05-19 18:14:53 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196458  231836      10     7         0      99         0       8 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196464     339      30     1         0     860         0      43   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196471  155634     833     5         0      11         0    4749     cloupetiler /gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/tmp/tmp61F2qm tiles_0_0 --tilesize 512 --page 0 
2023-05-19 18:14:53 [monitor] Stage exceeded its address space quota (using 378.7, allowed 8G)
2023-05-19 18:14:58 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196458  231836      10     7         0     152         0      10 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196464     339      30     1         0     860         0      43   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/cloupe/cloupe_tile_images join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.CLOUPE_TILE_IMAGES.fork0.ufe8a67f4d3 
                              196471  155634     832     5         0      11         0    5716     cloupetiler /gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/CLOUPE_TILE_IMAGES/fork0/join-ufe8a67f4d3/tmp/tmp61F2qm tiles_0_0 --tilesize 512 --page 0 
2023-05-19 18:14:58 [monitor] Stage exceeded its address space quota (using 378.7, allowed 8G)
2023-05-19 18:15:00 [info] cloupetiler output: 
2023-05-19 18:15:00 [time] __end__
