2023-05-19 18:14:26 [time] __start__
2023-05-19 18:14:26 [monitor] cgroup memory limit of 107374182400 bytes detected
2023-05-19 18:14:31 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196250  193334      10     6         0      39         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
                              196262     368      37     1         0    1142         0     486   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
2023-05-19 18:14:31 [monitor] Stage exceeded its address space quota (using 189.2, allowed 4G)
2023-05-19 18:14:36 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196250  193334      10     6         0      68         0       8 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
                              196262     461      60     1         0    2619         0     843   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
2023-05-19 18:14:36 [monitor] Stage exceeded its address space quota (using 189.3, allowed 4G)
2023-05-19 18:14:41 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196250  193334      10     6         0     103         0      10 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
                              196262     493      88     1         0    4506         0    1495   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/common/spaceranger_preflight_local main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPACERANGER_PREFLIGHT_LOCAL/fork0/chnk0-ufe8a67f4c1/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPACERANGER_PREFLIGHT_LOCAL.fork0.chnk0.ufe8a67f4c1 
                              196358     330      27     1         0     537         0      12     python -c import scipy; print(scipy.__version__) 
2023-05-19 18:14:41 [monitor] Stage exceeded its address space quota (using 189.6, allowed 4G)
2023-05-19 18:14:42 [time] __end__
