@include "rna/_spatial_imaging_cs.mro"

call _SPATIAL_IMAGING_CS as SPATIAL_IMAGING_CS(
    slide_serial_capture_area = "V12U06-358-A1",
    loupe_alignment_file      = "/gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/V12U06-358-A1_holes.json",
    gpr_file                  = null,
    reorientation_mode        = null,
    tissue_image_paths        = ["/gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif"],
    dark_images               = 0,
    barcode_whitelist         = "visium-v1",
)
