@include "rna/_sc_rna_analyzer_stages.mro"

call MERGE_CLUSTERS(
    matrix_h5   = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-ufe8a680239/files/preprocessed_matrix_h5.h5",
    pca_h5      = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-ufe8a680254/files/pca_h5.h5",
    clusters_h5 = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/RUN_GRAPH_CLUSTERING/fork0/join-ufe8a680254/files/clusters_h5.h5",
    skip        = false,
)
