@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_GRAPH_CLUSTERING(
    matrix_h5          = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-ufe8a680239/files/preprocessed_matrix_h5.h5",
    pca_h5             = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-ufe8a680254/files/pca_h5.h5",
    num_neighbors      = null,
    neighbor_a         = null,
    neighbor_b         = null,
    num_bcs            = null,
    input_pcs          = null,
    balltree_leaf_size = null,
    similarity_type    = "nn",
    skip               = false,
)
