@include "rna/_sc_rna_analyzer_stages.mro"

call RUN_UMAP(
    matrix_h5        = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-ufe8a680239/files/preprocessed_matrix_h5.h5",
    pca_h5           = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/SPATIAL_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-ufe8a680254/files/pca_h5.h5",
    skip             = false,
    random_seed      = null,
    n_neighbors      = null,
    input_pcs        = null,
    max_dims         = null,
    min_dist         = null,
    metric           = null,
    is_antibody_only = false,
)
