2023-05-19 18:14:43 [time] __start__
2023-05-19 18:14:43 [monitor] cgroup memory limit of 107374182400 bytes detected
2023-05-19 18:14:48 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0      39         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     302     268     1         0  115167         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:14:48 [monitor] Stage exceeded its address space quota (using 226.8, allowed 9G)
2023-05-19 18:14:53 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0      69         0       8 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     572     538     1         0  244404         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:14:53 [monitor] Stage exceeded its address space quota (using 227.0, allowed 9G)
2023-05-19 18:14:58 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0      99         0      10 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     689     655     1         0  760298         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:14:58 [monitor] Stage exceeded its address space quota (using 227.1, allowed 9G)
2023-05-19 18:15:03 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     130         0      12 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     812     778     1         0 1299112         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:03 [monitor] Stage exceeded its address space quota (using 227.3, allowed 9G)
2023-05-19 18:15:08 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     160         0      14 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     850     816     1         0 1496426         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:08 [monitor] Stage exceeded its address space quota (using 227.3, allowed 9G)
2023-05-19 18:15:13 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     190         0      16 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     892     858     1         0 1713090         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:13 [monitor] Stage exceeded its address space quota (using 227.3, allowed 9G)
2023-05-19 18:15:18 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     220         0      18 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435     932     896     1         0 1905431         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:18 [monitor] Stage exceeded its address space quota (using 227.4, allowed 9G)
2023-05-19 18:15:23 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     250         0      20 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435    1003     970     1         0 2078500         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:23 [monitor] Stage exceeded its address space quota (using 227.4, allowed 9G)
2023-05-19 18:15:28 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              196412  231900      12     7         0     280         0      22 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
                              196435    3581    3500     1         0 2092558         0       3   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_gene_index main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/WRITE_GENE_INDEX/fork0/chnk0-ufe8a67f4d3/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER.WRITE_GENE_INDEX.fork0.chnk0.ufe8a67f4d3 
2023-05-19 18:15:28 [monitor] Stage exceeded its address space quota (using 230.0, allowed 9G)
2023-05-19 18:15:30 [time] __end__
