2023-05-19 19:16:28 [time] __start__
2023-05-19 19:16:28 [monitor] cgroup memory limit of 107374182400 bytes detected
2023-05-19 19:16:33 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              227258  193334      10     6         0      39         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/counter/summarize_basic_reports join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ufe8a68034a /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ufe8a68034a/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS.fork0.ufe8a68034a 
                              227264     750     318     1         0    7092         0      81   python /gpfs/share/apps/spaceranger/1.2.1/external/martian/adapters/python/martian_shell.py /gpfs/share/apps/spaceranger/1.2.1/mro/rna/stages/counter/summarize_basic_reports join /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ufe8a68034a /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_CELLS_REPORTER/SUMMARIZE_BASIC_REPORTS/fork0/join-ufe8a68034a/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._CELLS_REPORTER.SUMMARIZE_BASIC_REPORTS.fork0.ufe8a68034a 
2023-05-19 19:16:33 [monitor] Stage exceeded its address space quota (using 189.5, allowed 6G)
2023-05-19 19:16:35 [time] __end__
