@include "rna/_cr_lib_stages.mro"

call SET_ALIGNER_SUBSAMPLE_RATE(
    barcodes_under_tissue    = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_IMAGING_CS/DETECT_TISSUE/fork0/chnk0-ufe8a67f4df/files/barcodes_under_tissue.json",
    corrected_barcode_counts = "/gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/BARCODE_CORRECTION/fork0/join-ufe8a67f747/files/correct_barcode_counts.bcc.bincode",
    rps_limit                = null,
)
