2023-05-19 19:04:48 [time] __start__
2023-05-19 19:04:48 [monitor] cgroup memory limit of 107374182400 bytes detected
2023-05-19 19:04:53 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              219347  231836      10     7         0      39         0       6 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_h5_matrix main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX.fork0.chnk0.ufe8a680090 
                              219355      76      38     1         0   25970         0     135   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_h5_matrix main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX.fork0.chnk0.ufe8a680090 
2023-05-19 19:04:53 [monitor] Stage exceeded its address space quota (using 226.5, allowed 5G)
2023-05-19 19:04:58 [monitor] Process tree:
                                 PID VSZ(mb) RSS(mb) Procs  Read(mb) (calls) Write(mb) (calls) COMMAND
                              219347  231836      10     7         0      69         0       8 /gpfs/share/apps/spaceranger/1.2.1/external/martian/bin/mrjob /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_h5_matrix main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX.fork0.chnk0.ufe8a680090 
                              219355      76      39     1         0   30357         0     327   /gpfs/share/apps/spaceranger/1.2.1/lib/bin/cr_lib martian write_h5_matrix main /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090 /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/SPATIAL_RNA_COUNTER_CS/SPATIAL_RNA_COUNTER/_BASIC_SPATIAL_RNA_COUNTER/_MATRIX_COMPUTER/WRITE_H5_MATRIX/fork0/chnk0-ufe8a680090/files /gpfs/data/yanailab/public/linda_share/maayan_STalign/ST358_A1/journal/SPATIAL_RNA_COUNTER_CS.SPATIAL_RNA_COUNTER._BASIC_SPATIAL_RNA_COUNTER._MATRIX_COMPUTER.WRITE_H5_MATRIX.fork0.chnk0.ufe8a680090 
2023-05-19 19:04:58 [monitor] Stage exceeded its address space quota (using 226.5, allowed 5G)
2023-05-19 19:05:00 [time] __end__
