spaceranger count --id=ST358_A1 --transcriptome=/gpfs/data/yanailab/refs/homo_sapiens/hg38_mm10_10X/hg38_and_mm10 --fastqs=/gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A --sample=BS20957A --image=/gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/ST-358.svs_0_MAG1.12x_6_ROT0_BOX3273.13014_19757.13014_19757.28497_3273.28497.tif --slide=V12U06-358 --area=A1 --localcores=8 --loupe-alignment=/gpfs/data/yanailab/projects/lp2700/data_raw/Project_Yanai_FCH3HY3BGXT_2023Apr05_fastq/Sample_BS20957A/V12U06-358-A1_holes.json --localmem=64
